Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G016400 Manihot esculenta HOM05D008232 ORTHO05D010390 7.0e-56 220.3 106 100.0
Potri.010G248600 Populus trichocarpa HOM05D008232 ORTHO05D010390 6.6e-22 107.5 108 55.6
CiPaw.03G112900 Carya illinoinensis HOM05D008232 ORTHO05D010390 2.1e-20 102.4 104 52.9
PGR031G2543 Punica granatum HOM05D008232 ORTHO05D010390 4.0e-19 98.2 103 54.4
Peaxi162Scf00207g00211 Petunia axillaris HOM05D005461 ORTHO05D007157 2.6e-18 95.5 108 50.9
Duzib235G0354 Durio zibethinus HOM05D008232 ORTHO05D010390 4.4e-18 94.7 102 53.9
Gorai.009G122800 Gossypium raimondii HOM05D008232 ORTHO05D010390 2.9e-17 92.0 106 47.2
Thecc.06G043900 Theobroma cacao HOM05D000051 ORTHO05D000015 3.7e-17 91.7 103 53.4
Gohir.D05G118800 Gossypium hirsutum HOM05D008232 ORTHO05D010390 6.4e-17 90.9 106 46.2
Gohir.A05G117900 Gossypium hirsutum HOM05D008232 ORTHO05D010390 8.3e-17 90.5 106 47.2
Solyc06g068660.3 Solanum lycopersicum HOM05D008232 ORTHO05D010390 3.2e-16 88.6 109 50.5
Sopen06g025940 Solanum pennellii HOM05D008232 ORTHO05D010390 3.2e-16 88.6 109 50.5
Ciclev10026814m.g Citrus clementina HOM05D008232 ORTHO05D010390 7.1e-16 87.4 110 45.5
QL04p062033 Quercus lobata HOM05D008232 ORTHO05D010390 7.8e-15 84.0 104 47.1
FAN02G3893 Fragaria x ananassa HOM05D008232 ORTHO05D010390 1.3e-14 83.2 105 48.6
Eucgr.J03142 Eucalyptus grandis HOM05D008232 ORTHO05D010390 2.3e-14 82.4 107 47.7
FvH4_6g27930 Fragaria vesca HOM05D008232 ORTHO05D010390 2.3e-14 82.4 104 48.1
Atru.chr1.2756 Acer truncatum HOM05D008232 ORTHO05D010390 5.1e-14 81.3 106 44.3
Prupe.3G107800 Prunus persica HOM05D008232 ORTHO05D010390 6.6e-14 80.9 103 47.6
TWI31G1109 Tripterygium wilfordii HOM05D008232 ORTHO05D010390 8.6e-14 80.5 103 44.7
FAN14G2943 Fragaria x ananassa HOM05D008232 ORTHO05D010390 1.1e-13 80.1 104 48.1
Oeu036452.1 Olea europaea HOM05D008232 ORTHO05D010390 1.1e-13 80.1 108 42.6
THA.LOC104813941 Tarenaya hassleriana HOM05D008232 ORTHO05D010390 1.5e-13 79.7 110 44.5
FAN05G2300 Fragaria x ananassa HOM05D008232 ORTHO05D010390 3.3e-13 78.6 105 45.7
FAN09G3435 Fragaria x ananassa HOM05D008232 ORTHO05D010390 3.3e-13 78.6 97 47.4
Cfa023521 Carpinus fangiana HOM05D008232 ORTHO05D010390 5.6e-13 77.8 87 52.9
Nitab4.5_0004890g0010 Nicotiana tabacum HOM05D008232 ORTHO05D010390 9.5e-13 77.0 95 49.5
RcHm_v2.0_Chr2g0131491 Rosa chinensis HOM05D008232 ORTHO05D010390 9.5e-13 77.0 92 47.8
Migut.I00645 Erythranthe guttata HOM05D008232 ORTHO05D010390 1.6e-12 76.3 112 45.5
Thhalv10019346m.g Eutrema salsugineum HOM05D008232 ORTHO05D010390 3.6e-12 75.1 117 47.0
HanXRQChr09g0274311 Helianthus annuus HOM05D008232 ORTHO05D010390 4.7e-12 74.7 104 46.2
Cpa.g.sc2471.1 Carica papaya HOM05D008232 ORTHO05D010390 1.4e-11 73.2 89 46.1
Lsat_1_v5_gn_4_85220 Lactuca sativa HOM05D008232 ORTHO05D010390 1.8e-11 72.8 99 41.4
Sp5g28080 Schrenkiella parvula HOM05D008232 ORTHO05D010390 1.8e-11 72.8 116 44.8
BolC6t39770H Brassica oleracea HOM05D008232 ORTHO05D010390 3.1e-11 72.0 113 43.4
MD09G1231600 Malus domestica HOM05D008232 ORTHO05D010390 4.0e-11 71.6 100 43.0
C06p47310 Brassica napus HOM05D008232 ORTHO05D010390 5.2e-11 71.2 113 42.5
CARHR066090 Cardamine hirsuta HOM05D008232 ORTHO05D010390 5.2e-11 71.2 116 44.0
Dinv23254 Davidia involucrata HOM05D008232 ORTHO05D010390 5.2e-11 71.2 104 46.2
BraA07t31461Z Brassica rapa HOM05D008232 ORTHO05D010390 6.8e-11 70.9 113 42.5
AL2G32870 Arabidopsis lyrata HOM05D008232 ORTHO05D010390 8.9e-11 70.5 117 41.0
A07p39100 Brassica napus HOM05D008232 ORTHO05D010390 8.9e-11 70.5 113 43.4
TAR383G0592 Trochodendron aralioides HOM05D008232 ORTHO05D010390 1.2e-10 70.1 102 40.2
AT1G73120 Arabidopsis thaliana HOM05D008232 ORTHO05D010390 1.5e-10 69.7 113 41.6
MELO3C016243.2 Cucumis melo HOM05D008232 ORTHO05D010390 1.5e-10 69.7 103 44.7
Sed0014962 Sechium edule HOM05D008232 ORTHO05D010390 1.5e-10 69.7 104 43.3
SalBow7G0137 Salvia bowleyana HOM05D008232 ORTHO05D010390 2.0e-10 69.3 96 45.8
Carub.0002s1989 Capsella rubella HOM05D008232 ORTHO05D010390 2.6e-10 68.9 116 41.4
C02p30580 Brassica napus HOM05D008232 ORTHO05D010390 3.4e-10 68.6 114 40.4
COL.COLO4_26749 Corchorus olitorius HOM05D008232 ORTHO05D010390 3.4e-10 68.6 76 50.0
CsaV3_4G007020 Cucumis sativus L. HOM05D008232 ORTHO05D010390 5.8e-10 67.8 103 44.7
A02p18450 Brassica napus HOM05D008232 ORTHO05D010390 9.9e-10 67.0 119 40.3
BraA02t06884Z Brassica rapa HOM05D008232 ORTHO05D010390 9.9e-10 67.0 119 40.3
Lsat_1_v5_gn_5_114460 Lactuca sativa HOM05D006153 ORTHO05D007701 1.3e-09 66.6 89 38.2
Aa31LG4G3390 Aethionema arabicum HOM05D008232 ORTHO05D010390 2.2e-09 65.9 116 41.4
Cc04_g05510 Coffea canephora HOM05D000169 ORTHO05D001214 2.2e-09 65.9 97 49.5
ClCG07G011230 Citrullus lanatus HOM05D008232 ORTHO05D010390 4.9e-09 64.7 93 43.0
CANSAT64G1479 Cannabis sativa HOM05D008232 ORTHO05D010390 1.9e-08 62.8 106 34.0
MBI14_g17362_MAGBIO Magnolia biondii HOM05D008232 ORTHO05D010390 3.2e-08 62.0 69 43.5
Sc10g0006420 Simmondsia chinensis HOM05D008232 ORTHO05D010390 3.2e-08 62.0 105 34.3
Hund22378 Selenicereus undatus HOM05D008232 ORTHO05D010390 5.4e-08 61.2 101 34.7
HanXRQChr16g0514461 Helianthus annuus HOM05D006153 ORTHO05D007701 2.7e-07 58.9 98 33.7
PSO478G5163 Papaver somniferum HOM05D008232 ORTHO05D010390 2.7e-07 58.9 103 40.8
Os12g0507700 Oryza sativa ssp. japonica HOM05D006153 ORTHO05D007701 3.5e-07 58.5 66 45.5
Aqoxy6G02752 Aquilegia oxysepala HOM05D006153 ORTHO05D007701 6.0e-07 57.8 65 41.5
HanXRQChr16g0514451 Helianthus annuus HOM05D006153 ORTHO05D007701 6.0e-07 57.8 105 30.5
Lalb_Chr02g0145121 Lupinus albus HOM05D006153 ORTHO05D007701 6.0e-07 57.8 58 46.6
ATR0030G019 Amborella trichopoda HOM05D006153 ORTHO05D007701 7.8e-07 57.4 46 56.5
Sc10g0006360 Simmondsia chinensis HOM05D008232 ORTHO05D010390 7.8e-07 57.4 105 33.3
Aa31LG8G6290 Aethionema arabicum HOM05D006153 ORTHO05D007701 1.3e-06 56.6 64 45.3
Aqoxy7G03060 Aquilegia oxysepala HOM05D008232 ORTHO05D010390 1.3e-06 56.6 92 40.2
HanXRQChr16g0514901 Helianthus annuus HOM05D006153 ORTHO05D007701 1.3e-06 56.6 55 47.3
Lj5g0020623 Lotus japonicus HOM05D006153 ORTHO05D007701 2.3e-06 55.8 34 64.7
QL11p029270 Quercus lobata HOM05D006153 ORTHO05D007701 3.0e-06 55.5 87 33.3
PSO782G2603 Papaver somniferum HOM05D008232 ORTHO05D010390 3.9e-06 55.1 101 41.6
Peaxi162Scf00152g00320 Petunia axillaris HOM05D006153 ORTHO05D007701 3.9e-06 55.1 46 43.5
Lj5g0024415 Lotus japonicus HOM05D006153 ORTHO05D007701 6.6e-06 54.3 93 35.5
Nitab4.5_0012681g0010 Nicotiana tabacum HOM05D006153 ORTHO05D007701 6.6e-06 54.3 45 51.1
Zm00001eb138020 Zea mays HOM05D006153 ORTHO05D007701 6.6e-06 54.3 66 43.9
Actinidia08925 Actinidia chinensis HOM05D008232 ORTHO05D010390 8.6e-06 53.9 71 46.5
arahy.Tifrunner.gnm1.ann1.EHR7LK Arachis hypogaea HOM05D006153 ORTHO05D007701 8.6e-06 53.9 38 55.3
Psat4g228040 Pisum sativum HOM05D006153 ORTHO05D007701 8.6e-06 53.9 30 66.7


User provided reference genes

Program Settings