Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 5.1e-254 880.6 439 100.0
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.3e-140 503.8 444 63.1
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 1.1e-126 457.6 472 53.6
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.2e-123 444.9 436 57.1
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 3.0e-121 439.5 434 56.9
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 8.8e-121 438.0 447 55.7
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 7.5e-120 434.9 441 58.0
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 2.2e-119 433.3 423 57.7
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 2.2e-119 433.3 441 55.1
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.9e-116 422.9 434 54.8
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.5e-116 421.8 438 53.9
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 4.2e-115 419.1 444 52.9
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.5e-115 418.7 445 53.5
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 7.2e-115 418.3 443 54.6
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.2e-112 411.0 439 52.8
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 1.5e-112 410.6 443 52.6
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 5.7e-112 408.7 437 53.3
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 5.7e-112 408.7 440 53.0
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 7.5e-112 408.3 439 53.1
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.4e-110 404.1 438 54.6
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-110 403.7 447 54.1
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 9.1e-110 401.4 433 52.7
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.3e-108 397.5 451 51.9
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 1.3e-108 397.5 434 53.9
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 8.6e-108 394.8 424 52.4
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 7.2e-107 391.7 436 53.7
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 3.6e-106 389.4 435 52.0
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.3e-105 386.7 422 51.2
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 9.8e-104 381.3 445 51.7
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.7e-103 380.6 455 51.9
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 4.9e-103 379.0 431 52.7
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.4e-102 376.7 432 49.1
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 2.7e-101 373.2 440 48.6
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.7e-100 370.5 446 48.7
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 5.0e-100 369.0 439 48.7
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 6.6e-100 368.6 452 50.0
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 8.6e-100 368.2 431 50.1
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.6e-98 364.0 431 50.1
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 2.8e-98 363.2 410 51.5
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 3.7e-95 352.8 434 48.8
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 6.4e-95 352.1 427 47.5
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 7.0e-94 348.6 430 47.7
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 7.0e-94 348.6 430 47.7
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.0e-93 347.1 428 47.4
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 3.9e-92 342.8 430 45.3
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 3.9e-92 342.8 427 45.4
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.1e-91 341.3 447 47.4
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 1.9e-91 340.5 407 48.4
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 2.0e-88 330.5 428 45.3
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 9.8e-88 328.2 352 52.3
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 8.3e-87 325.1 444 45.9
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 7.1e-86 322.0 476 43.3
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 1.6e-85 320.9 421 48.2
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 6.2e-82 308.9 375 50.1
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 8.9e-73 278.5 420 45.0
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.7e-68 264.2 439 40.1
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 8.7e-68 261.9 426 37.6
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.1e-67 261.5 367 44.4
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 1.9e-67 260.8 417 38.8
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 1.9e-62 244.2 428 37.1
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.1e-59 235.0 356 45.5
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.1e-58 230.7 425 35.5
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 4.8e-58 229.6 440 36.8
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 6.2e-58 229.2 440 36.6
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.1e-57 228.4 438 35.8
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.4e-57 228.0 410 38.0
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 1.4e-57 228.0 442 36.7
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 4.0e-57 226.5 423 35.0
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 3.2e-54 216.9 435 35.4
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.6e-53 214.5 393 37.4
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 4.6e-53 213.0 428 32.7
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 2.3e-52 210.7 439 34.4
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 2.5e-51 207.2 414 35.7
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.3e-50 204.9 423 32.2
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.4e-49 201.4 410 32.2
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.8e-49 201.1 423 30.7
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 2.4e-49 200.7 423 31.7
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 2.4e-49 200.7 423 31.7
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 2.4e-49 200.7 423 31.9
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 5.3e-49 199.5 286 44.8
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 6.9e-49 199.1 423 31.7
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 6.9e-49 199.1 423 31.7
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 9.0e-49 198.7 377 35.3
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.2e-48 198.4 424 34.9
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 3.4e-48 196.8 394 34.8
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.7e-47 194.5 375 34.9
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.2e-47 194.1 443 31.8
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 7.1e-46 189.1 404 33.2
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 9.3e-46 188.7 422 31.8
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 7.9e-45 185.7 423 31.9
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 2.3e-44 184.1 433 31.9
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 6.7e-44 182.6 415 32.8
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.5e-43 181.4 183 55.2
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.6e-42 177.9 367 35.7
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 1.8e-41 174.5 241 46.1
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.6e-40 170.6 135 57.8
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 5.8e-40 169.5 406 31.3
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.0e-39 168.7 389 31.4
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 1.3e-39 168.3 431 32.3
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 1.3e-39 168.3 405 33.1
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 5.0e-39 166.4 391 30.7
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.9e-38 164.5 419 29.6
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.5e-38 164.1 336 33.0
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 7.2e-38 162.5 387 32.0
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 7.2e-38 162.5 191 50.8
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 7.2e-38 162.5 334 33.8
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 9.3e-38 162.2 336 32.7
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 2.7e-37 160.6 415 30.1
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 3.5e-37 160.2 166 51.8
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-36 157.9 382 31.7
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.9e-35 154.5 389 32.6
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 4.1e-33 146.7 377 28.6
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 9.0e-33 145.6 260 40.8
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 2.0e-32 144.4 286 38.8
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 8.5e-31 139.0 425 27.8
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 8.5e-31 139.0 147 51.0
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.1e-30 138.7 425 28.2
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 2.5e-30 137.5 147 50.3
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 7.2e-30 136.0 395 30.4
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 7.2e-30 136.0 368 31.0
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 3.6e-29 133.7 137 53.3
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 6.1e-29 132.9 395 29.6
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.1e-29 132.9 368 30.7
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.3e-28 131.0 158 44.3
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.3e-28 131.0 420 28.3
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 5.1e-28 129.8 169 45.0
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 1.5e-27 128.3 174 42.0
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 9.7e-27 125.6 165 43.6
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 9.7e-27 125.6 165 43.6
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.1e-25 122.1 420 28.8
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 1.2e-24 118.6 132 43.9
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.5e-24 116.7 118 51.7
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 4.7e-21 106.7 301 28.2
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.8e-20 104.8 73 68.5
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 3.3e-19 100.5 134 39.6
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 3.1e-17 94.0 112 42.0
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.0e-16 91.3 121 46.3
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.6e-16 90.9 102 45.1
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 5.9e-16 89.7 120 38.3
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 6.5e-15 86.3 103 36.9
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 4.2e-14 83.6 160 33.1
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.4e-12 78.6 104 44.2
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 2.7e-08 64.3 105 30.5


User provided reference genes

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