Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 1.6e-35 152.1 72 100.0
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 1.1e-33 146.0 72 94.4
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 4.2e-28 127.5 72 83.3
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 2.3e-26 121.7 72 76.4
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 6.7e-26 120.2 69 79.7
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 6.7e-26 120.2 67 80.6
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 8.7e-26 119.8 75 77.3
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 1.5e-25 119.0 72 75.0
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 3.3e-25 117.9 70 80.0
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 4.3e-25 117.5 72 79.2
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 5.7e-25 117.1 74 75.7
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 5.7e-25 117.1 70 78.6
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.6e-24 115.5 74 75.7
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.6e-24 115.5 74 75.7
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 1.6e-24 115.5 74 75.7
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 2.8e-24 114.8 72 77.8
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 4.8e-24 114.0 72 76.4
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 4.8e-24 114.0 74 77.0
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 8.2e-24 113.2 72 72.2
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.1e-23 112.8 74 73.0
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.1e-23 112.8 72 70.8
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 1.1e-23 112.8 71 74.6
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 1.4e-23 112.5 73 75.3
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.4e-23 111.7 59 83.1
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 3.1e-23 111.3 67 73.1
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 4.0e-23 110.9 59 81.4
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 5.3e-23 110.5 72 72.2
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 6.9e-23 110.2 59 81.4
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 6.9e-23 110.2 67 74.6
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 6.9e-23 110.2 72 69.4
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 6.9e-23 110.2 72 69.4
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 6.9e-23 110.2 72 70.8
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 9.0e-23 109.8 67 73.1
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.2e-22 109.4 74 68.9
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.2e-22 109.4 74 68.9
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 1.2e-22 109.4 64 79.7
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 1.5e-22 109.0 58 82.8
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 1.5e-22 109.0 58 82.8
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.5e-22 109.0 71 71.8
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 1.5e-22 109.0 58 81.0
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 1.5e-22 109.0 72 69.4
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 2.6e-22 108.2 72 66.7
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 2.6e-22 108.2 72 72.2
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 3.4e-22 107.8 72 68.1
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 3.4e-22 107.8 69 72.5
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 3.4e-22 107.8 60 78.3
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 5.8e-22 107.1 73 72.6
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 5.8e-22 107.1 69 78.3
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.0e-21 106.3 57 80.7
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 1.0e-21 106.3 57 80.7
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.0e-21 106.3 72 65.3
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.3e-21 105.9 75 66.7
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 1.3e-21 105.9 64 73.4
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 1.3e-21 105.9 73 69.9
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.3e-21 105.9 64 73.4
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 1.7e-21 105.5 65 72.3
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 1.7e-21 105.5 65 72.3
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 1.7e-21 105.5 65 72.3
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 2.2e-21 105.1 73 68.5
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 2.2e-21 105.1 73 68.5
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 2.2e-21 105.1 73 68.5
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 2.2e-21 105.1 73 68.5
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 2.2e-21 105.1 73 68.5
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 2.2e-21 105.1 73 68.5
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 3.8e-21 104.4 73 67.1
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 3.8e-21 104.4 65 72.3
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 3.8e-21 104.4 62 71.0
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 5.0e-21 104.0 75 65.3
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 5.0e-21 104.0 76 67.1
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 5.0e-21 104.0 63 69.8
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 6.5e-21 103.6 64 70.3
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 6.5e-21 103.6 73 67.1
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 6.5e-21 103.6 63 69.8
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 6.5e-21 103.6 70 62.9
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 8.4e-21 103.2 67 68.7
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 1.4e-20 102.4 74 63.5
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 1.4e-20 102.4 62 72.6
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 1.4e-20 102.4 66 71.2
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 1.4e-20 102.4 58 75.9
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 1.9e-20 102.1 62 72.6
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 3.2e-20 101.3 73 64.4
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 3.2e-20 101.3 70 65.7
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 3.2e-20 101.3 62 71.0
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 5.5e-20 100.5 51 84.3
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 7.1e-20 100.1 69 69.6
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 7.1e-20 100.1 63 71.4
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 9.3e-20 99.8 53 79.2
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 1.2e-19 99.4 59 74.6
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.1e-19 98.6 53 79.2
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 2.7e-19 98.2 70 57.1
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 3.5e-19 97.8 71 66.2
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 3.5e-19 97.8 56 76.8
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 3.5e-19 97.8 53 81.1
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 3.5e-19 97.8 72 66.7
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.6e-19 97.4 60 71.7
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 6.1e-19 97.1 70 61.4
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 7.9e-19 96.7 71 66.2
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 7.9e-19 96.7 71 66.2
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.0e-18 96.3 71 64.8
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 1.0e-18 96.3 56 75.0
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 1.3e-18 95.9 73 63.0
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 1.8e-18 95.5 47 89.4
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 3.0e-18 94.7 62 67.7
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 5.1e-18 94.0 74 62.2
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 6.7e-18 93.6 54 74.1
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.1e-17 92.8 49 81.6
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.5e-17 92.4 61 67.2
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 3.3e-17 91.3 56 73.2
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 2.2e-16 88.6 64 64.1
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 6.3e-16 87.0 47 76.6
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 8.2e-16 86.7 62 64.5
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.4e-15 85.9 55 67.3
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 9.0e-15 83.2 46 78.3
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 1.5e-14 82.4 54 63.0
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 4.5e-14 80.9 48 70.8
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.8e-13 77.8 54 61.1
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 3.8e-13 77.8 56 60.7
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 7.2e-12 73.6 50 60.0
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 2.7e-11 71.6 49 59.2
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.0e-10 69.7 60 48.3
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 1.8e-10 68.9 37 75.7
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 8.8e-10 66.6 45 62.2
Nn3g18517 Nelumbo nucifera HOM05D005857 ORTHO05D007193 2.4e-07 58.5 46 71.7
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 3.1e-07 58.2 30 76.7
Medtr2g036340 Medicago truncatula HOM05D005857 ORTHO05D007193 5.3e-07 57.4 58 48.3
Medtr8g046930 Medicago truncatula HOM05D005857 ORTHO05D007193 5.3e-07 57.4 58 48.3
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 6.9e-07 57.0 48 52.1
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 6.9e-07 57.0 57 43.9
Zm00001eb341140 Zea mays HOM05D005857 ORTHO05D007193 2.6e-06 55.1 49 57.1
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 5.9e-06 53.9 55 43.6


User provided reference genes

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