Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 1.5e-142 509.6 267 100.0
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 2.0e-51 206.8 199 56.3
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 2.9e-50 203.0 200 57.5
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 8.4e-50 201.4 200 59.5
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 8.4e-50 201.4 198 56.1
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 4.2e-49 199.1 200 58.5
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 5.5e-49 198.7 200 55.5
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 7.2e-49 198.4 200 56.0
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 7.2e-49 198.4 195 57.4
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.2e-48 197.6 200 55.0
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 2.7e-48 196.4 200 55.5
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 3.5e-48 196.1 199 54.3
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 7.9e-48 194.9 195 54.4
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.0e-47 193.0 195 55.9
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 3.9e-47 192.6 200 60.0
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 4.3e-46 189.1 195 54.9
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 5.7e-46 188.7 195 55.4
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 7.4e-46 188.3 199 54.3
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 9.7e-46 188.0 195 55.4
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 9.7e-46 188.0 198 53.5
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 1.3e-45 187.6 198 53.5
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 1.3e-45 187.6 199 52.3
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 1.3e-45 187.6 199 53.8
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 2.8e-45 186.4 195 53.8
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 3.7e-45 186.0 195 54.9
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 3.7e-45 186.0 200 52.5
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 4.8e-45 185.7 192 53.1
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 6.3e-45 185.3 196 52.6
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 8.2e-45 184.9 194 54.1
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 8.2e-45 184.9 200 52.5
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.1e-44 184.5 199 52.3
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 1.1e-44 184.5 177 58.2
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.1e-44 183.0 200 54.0
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 4.1e-44 182.6 195 55.4
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 5.3e-44 182.2 200 51.0
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 5.3e-44 182.2 200 53.5
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.3e-44 182.2 200 53.5
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 5.3e-44 182.2 195 51.3
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 1.2e-43 181.0 200 50.0
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 1.5e-43 180.6 193 52.8
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 1.5e-43 180.6 200 53.5
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.0e-43 180.3 196 52.0
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.4e-43 179.5 196 52.6
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 5.9e-43 178.7 195 51.3
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 5.9e-43 178.7 171 56.7
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 7.7e-43 178.3 200 51.0
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 7.7e-43 178.3 200 49.5
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.0e-42 177.9 192 52.1
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 1.7e-42 177.2 194 51.0
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.7e-42 177.2 195 50.3
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 2.2e-42 176.8 200 49.5
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 6.5e-42 175.3 171 55.6
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 1.4e-41 174.1 192 53.1
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 1.4e-41 174.1 208 50.0
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 1.4e-41 174.1 195 51.8
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 2.5e-41 173.3 171 56.1
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 3.2e-41 172.9 199 50.8
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 3.2e-41 172.9 195 49.7
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 4.2e-41 172.6 195 49.2
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 5.5e-41 172.2 171 53.8
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 1.6e-40 170.6 195 51.8
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 1.6e-40 170.6 199 51.3
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 1.6e-40 170.6 200 50.0
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.6e-40 170.6 200 50.0
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 2.7e-40 169.9 172 54.1
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 2.7e-40 169.9 186 51.6
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 3.6e-40 169.5 195 51.8
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 3.6e-40 169.5 195 51.8
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 4.6e-40 169.1 195 49.2
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 6.1e-40 168.7 192 49.0
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 6.1e-40 168.7 191 52.9
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 1.0e-39 167.9 195 49.7
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 1.0e-39 167.9 197 52.8
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 1.0e-39 167.9 199 49.7
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.4e-39 167.5 208 48.1
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 2.3e-39 166.8 195 50.3
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 3.0e-39 166.4 199 49.2
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 3.9e-39 166.0 197 48.2
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 5.1e-39 165.6 195 49.7
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 1.1e-38 164.5 196 48.5
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 1.5e-38 164.1 207 46.9
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 2.0e-38 163.7 194 48.5
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 9.7e-38 161.4 171 52.0
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 1.3e-37 161.0 197 50.8
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 2.2e-37 160.2 260 41.2
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 3.1e-36 156.4 201 47.8
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 5.3e-36 155.6 198 47.0
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 9.1e-36 154.8 200 47.5
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 1.2e-35 154.5 168 52.4
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 2.6e-35 153.3 194 48.5
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 1.7e-34 150.6 196 46.9
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 8.5e-34 148.3 180 50.0
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 4.2e-33 146.0 171 45.0
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 9.4e-33 144.8 173 48.6
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.2e-32 144.4 256 38.7
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 4.4e-30 136.0 181 43.1
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.3e-29 134.4 177 44.1
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 2.2e-29 133.7 140 53.6
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 2.2e-29 133.7 233 37.3
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 1.1e-28 131.3 180 43.9
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 2.6e-27 126.7 139 52.5
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 3.8e-26 122.9 139 51.1
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 9.4e-25 118.2 186 40.3
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 3.0e-23 113.2 166 42.8
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 3.3e-22 109.8 139 46.0
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 6.3e-21 105.5 184 47.3
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 9.1e-20 101.7 131 46.6
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 1.0e-18 98.2 195 31.3
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 3.6e-16 89.7 67 59.7
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 1.4e-15 87.8 138 39.9
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 3.0e-15 86.7 141 37.6
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 4.0e-15 86.3 79 60.8
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 1.5e-14 84.3 72 58.3
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 5.7e-14 82.4 173 34.7
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 1.3e-13 81.3 170 33.5
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 1.0e-10 71.6 128 43.8
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 2.5e-09 67.0 57 61.4
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 5.5e-09 65.9 57 59.6
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 2.1e-08 63.9 37 67.6
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 4.7e-08 62.8 57 57.9
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 6.1e-08 62.4 74 50.0
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 1.4e-07 61.2 38 73.7
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.4e-07 61.2 38 68.4
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.4e-07 61.2 110 38.2
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 4.0e-07 59.7 139 28.8
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 5.2e-07 59.3 96 39.6
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 1.5e-06 57.8 37 62.2


User provided reference genes

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