Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 6.7e-88 327.4 175 100.0
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 1.3e-59 233.4 211 62.6
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 2.5e-58 229.2 202 67.3
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 3.0e-56 222.2 196 66.8
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 1.2e-55 220.3 210 62.9
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 9.8e-55 217.2 213 60.1
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 3.1e-53 212.2 212 60.8
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 1.2e-52 210.3 217 58.1
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 3.5e-52 208.8 170 72.9
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 5.9e-52 208.0 195 62.6
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 7.7e-52 207.6 216 59.7
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 5.0e-51 204.9 134 81.3
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 5.0e-51 204.9 204 60.8
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 1.1e-50 203.8 134 84.3
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 1.5e-50 203.4 128 86.7
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 2.5e-50 202.6 209 59.8
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 3.2e-50 202.2 211 57.8
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 5.5e-50 201.4 116 88.8
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 5.5e-50 201.4 134 80.6
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 7.2e-50 201.1 176 67.6
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 7.2e-50 201.1 205 59.0
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 9.4e-50 200.7 192 60.9
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 1.2e-49 200.3 117 89.7
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 1.2e-49 200.3 135 82.2
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 2.7e-49 199.1 210 59.5
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 3.6e-49 198.7 217 57.6
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 3.6e-49 198.7 134 79.9
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 4.7e-49 198.4 217 57.1
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 4.7e-49 198.4 217 57.1
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 6.1e-49 198.0 208 57.7
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 6.1e-49 198.0 134 80.6
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 6.1e-49 198.0 134 80.6
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 6.1e-49 198.0 135 78.5
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 8.0e-49 197.6 186 65.6
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 8.0e-49 197.6 186 65.6
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 8.0e-49 197.6 194 60.3
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 8.0e-49 197.6 133 79.7
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 1.0e-48 197.2 135 79.3
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 1.4e-48 196.8 140 76.4
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 2.3e-48 196.1 131 81.7
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 2.3e-48 196.1 133 78.9
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.0e-48 195.7 132 78.8
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 3.0e-48 195.7 138 78.3
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 6.8e-48 194.5 134 79.1
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 1.5e-47 193.4 166 67.5
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 1.5e-47 193.4 166 67.5
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 2.0e-47 193.0 134 79.9
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 2.0e-47 193.0 117 87.2
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 3.4e-47 192.2 124 86.3
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 3.4e-47 192.2 114 84.2
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 4.4e-47 191.8 135 77.0
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 5.7e-47 191.4 202 57.9
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 7.5e-47 191.0 133 75.9
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.5e-47 191.0 134 78.4
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.5e-47 191.0 134 78.4
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 1.7e-46 189.9 148 72.3
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 1.7e-46 189.9 134 76.9
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 2.2e-46 189.5 113 87.6
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 2.8e-46 189.1 203 55.7
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 4.9e-46 188.3 182 61.5
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 8.3e-46 187.6 135 77.8
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 1.8e-45 186.4 129 80.6
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 1.8e-45 186.4 111 88.3
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 3.1e-45 185.7 152 70.4
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 1.2e-44 183.7 132 75.8
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 1.6e-44 183.3 150 65.3
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 1.6e-44 183.3 117 81.2
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 2.0e-44 183.0 107 87.9
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 2.7e-44 182.6 140 72.1
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 3.5e-44 182.2 124 78.2
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 3.5e-44 182.2 124 75.8
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 4.5e-44 181.8 124 75.8
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 4.5e-44 181.8 128 73.4
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 5.9e-44 181.4 112 84.8
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 5.9e-44 181.4 108 85.2
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 7.7e-44 181.0 136 72.1
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 1.0e-43 180.6 169 63.9
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 1.7e-43 179.9 124 75.0
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 2.3e-43 179.5 109 82.6
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 2.3e-43 179.5 109 82.6
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 2.3e-43 179.5 109 82.6
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 2.3e-43 179.5 109 82.6
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 2.9e-43 179.1 161 67.7
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 2.9e-43 179.1 115 79.1
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 3.8e-43 178.7 125 74.4
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 3.8e-43 178.7 129 75.2
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 8.6e-43 177.6 124 75.8
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 1.1e-42 177.2 125 79.2
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 1.1e-42 177.2 107 85.0
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 4.2e-42 175.3 146 69.2
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 7.2e-42 174.5 120 76.7
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 1.2e-41 173.7 107 82.2
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 1.2e-41 173.7 109 79.8
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 2.1e-41 172.9 107 81.3
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 2.1e-41 172.9 107 81.3
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 1.0e-40 170.6 125 70.4
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 2.3e-40 169.5 113 75.2
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 8.3e-38 161.0 157 58.6
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 1.1e-37 160.6 117 72.6
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 9.2e-37 157.5 152 55.9
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 1.2e-36 157.1 118 70.3
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 2.0e-36 156.4 152 55.3
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.7e-36 156.0 210 52.4
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 3.3e-34 149.1 101 75.2
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 3.3e-34 149.1 192 54.2
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 1.4e-32 143.7 85 88.2
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 2.6e-31 139.4 86 84.9
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 2.2e-30 136.3 114 63.2
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 1.9e-29 133.3 86 77.9
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 1.9e-29 133.3 86 77.9
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 8.1e-25 117.9 121 52.1
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 4.1e-21 105.5 143 47.6
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 1.5e-18 97.1 53 92.5
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 5.6e-18 95.1 85 55.3
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 3.6e-17 92.4 106 47.2


User provided reference genes

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