Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 0.0e+00 2055.8 1042 100.0
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 0.0e+00 1257.3 1098 63.2
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 0.0e+00 1204.1 1102 60.7
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1173.3 1111 59.1
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1170.6 1127 58.1
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1161.0 1112 59.1
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1150.2 1132 58.3
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 0.0e+00 1132.9 846 71.3
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1126.3 1138 57.2
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 0.0e+00 1097.0 1114 56.4
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1095.9 1091 57.0
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1094.0 1118 56.8
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1089.7 1122 55.9
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1088.2 1109 56.7
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 0.0e+00 1086.2 1109 56.6
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1086.2 1120 56.0
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1083.6 1093 56.1
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 0.0e+00 1081.6 1121 55.3
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.5e-307 1058.9 1122 55.2
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.2e-306 1056.6 1058 57.8
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 2.2e-303 1045.8 1108 54.9
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 2.9e-303 1045.4 1109 54.6
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 7.3e-299 1030.8 1106 54.3
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 2.8e-298 1028.9 1102 53.6
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 1.1e-297 1026.9 1102 54.6
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 2.3e-297 1025.8 1099 53.7
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 9.9e-296 1020.4 1108 53.6
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 1.3e-295 1020.0 1103 53.0
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 2.3e-292 1009.2 1110 52.4
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 2.3e-292 1009.2 1105 53.6
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.5e-291 1006.5 1132 53.3
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.9e-291 1006.1 1103 52.9
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 7.3e-291 1004.2 1112 52.4
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 9.6e-291 1003.8 1104 52.8
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 2.8e-290 1002.3 1085 53.5
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.8e-290 1002.3 1113 52.8
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.8e-287 991.9 1137 51.8
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 4.9e-287 991.5 1141 51.1
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 4.9e-287 991.5 1082 53.0
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 2.7e-285 985.7 1128 52.2
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.1e-284 981.5 1006 55.9
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 9.6e-283 977.2 991 57.0
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 5.3e-281 971.5 1021 54.9
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.3e-279 966.8 1143 49.9
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 2.9e-279 965.7 1112 51.6
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 6.4e-279 964.5 1147 50.0
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 2.5e-275 952.6 1114 50.0
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 3.1e-273 945.7 1134 50.5
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 6.9e-273 944.5 944 56.8
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 7.6e-272 941.0 1105 51.2
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 1.7e-271 939.9 1116 49.6
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 2.9e-271 939.1 1148 48.8
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 6.4e-271 937.9 952 56.5
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.4e-270 936.8 1132 48.7
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 2.4e-270 936.0 1138 50.4
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 4.2e-270 935.3 1114 49.5
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 7.1e-270 934.5 1082 51.4
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 4.6e-269 931.8 1114 49.2
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 6.0e-269 931.4 1105 49.1
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 1.8e-268 929.9 1098 51.3
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.8e-268 929.9 956 55.8
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 8.7e-268 927.5 1075 50.5
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.1e-267 927.2 1066 51.7
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 3.3e-267 925.6 1117 49.1
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 9.0e-265 917.5 1074 49.6
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.8e-264 914.8 1067 49.6
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 4.9e-263 911.8 1076 49.3
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.4e-262 910.2 1064 50.6
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 3.2e-262 909.1 1061 49.3
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 5.5e-262 908.3 1061 49.6
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 3.0e-260 902.5 1065 49.6
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 3.0e-260 902.5 1065 49.6
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 3.9e-260 902.1 1059 49.7
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 8.7e-260 901.0 1070 49.4
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 4.3e-259 898.7 1061 49.7
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 6.3e-258 894.8 1092 48.3
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.4e-257 893.6 1071 48.9
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.4e-257 893.6 1190 46.2
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.8e-257 893.3 1084 48.7
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 5.3e-257 891.7 1077 48.4
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.2e-256 890.6 1131 47.9
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.0e-255 885.2 1106 48.2
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 6.5e-255 884.8 1131 46.9
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 7.2e-254 881.3 1082 47.7
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 2.7e-253 879.4 1082 48.0
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 3.6e-253 879.0 1103 48.5
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 3.6e-253 879.0 1082 47.6
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 1.0e-252 877.5 1093 48.1
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 3.0e-252 875.9 1085 47.8
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 1.5e-251 873.6 1062 48.3
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 4.3e-251 872.1 1064 49.2
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 6.3e-250 868.2 1100 48.4
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 2.4e-249 866.3 1133 47.0
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 4.5e-248 862.1 1076 48.5
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 5.9e-248 861.7 1117 46.3
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 6.5e-247 858.2 1039 48.3
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 6.5e-247 858.2 872 56.1
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 9.4e-246 854.4 1092 46.7
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 3.6e-245 852.4 1101 48.0
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 2.3e-244 849.7 1092 46.7
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 3.0e-244 849.4 1145 46.0
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 3.9e-244 849.0 1115 47.4
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 1.3e-242 844.0 1077 46.8
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 6.1e-237 825.1 934 53.2
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 1.1e-233 814.3 1160 45.9
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 2.3e-228 796.6 1123 43.5
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 6.1e-221 771.9 531 75.5
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 1.0e-220 771.2 874 53.7
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.5e-216 755.7 705 59.7
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.0e-215 754.6 645 63.1
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 8.6e-215 751.5 688 61.5
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.8e-204 715.3 685 59.1
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 2.0e-203 713.8 809 51.1
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 8.3e-202 708.4 1115 41.3
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.8e-201 707.2 1126 42.3
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 2.5e-198 696.8 763 53.5
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 4.3e-198 696.0 854 49.6
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.2e-197 694.5 772 53.1
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 6.2e-197 692.2 844 49.6
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 2.8e-189 666.8 706 55.2
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 3.2e-185 653.3 529 66.0
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 9.2e-185 651.7 444 73.6
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 2.2e-178 630.6 1080 39.4
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 2.4e-172 610.5 651 55.8
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 4.0e-172 609.8 640 54.5
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 6.0e-160 569.3 916 42.2
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 2.0e-126 458.0 610 44.9
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 5.9e-123 446.4 753 38.4
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 9.4e-121 439.1 268 83.6
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 9.4e-121 439.1 268 83.6
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.2e-120 438.7 710 42.7
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.8e-103 381.7 413 52.5
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 1.5e-97 362.1 328 55.5
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 9.8e-94 349.4 600 40.2
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 3.7e-93 347.4 600 40.0
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.3e-89 334.3 208 82.2
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 8.1e-72 276.6 585 37.8
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 8.4e-61 240.0 221 56.1
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 5.3e-55 220.7 142 77.5
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 4.4e-54 217.6 681 31.0
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.8e-53 214.5 625 30.2
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.9e-41 175.6 126 69.0
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 1.0e-37 163.3 157 59.9
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 9.3e-36 156.8 92 84.8
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 4.8e-32 144.4 91 78.0
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 1.8e-31 142.5 159 56.0
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.1e-28 133.3 163 44.2
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.4e-20 106.3 386 28.8
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 1.6e-19 102.8 334 32.0
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 1.1e-17 96.7 67 68.7
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 2.9e-13 82.0 115 41.7
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 1.9e-12 79.3 125 43.2
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 7.4e-09 67.4 111 38.7
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 9.7e-09 67.0 117 40.2
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 1.7e-08 66.2 112 40.2
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 3.5e-06 58.5 220 30.5
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 5.9e-06 57.8 124 32.3


User provided reference genes

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