Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 2202.6 1160 100.0
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1503.0 1192 69.3
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1496.1 1265 65.1
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1407.9 1174 64.6
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1392.5 1182 65.2
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1388.6 1150 65.8
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1381.7 1166 67.2
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1377.8 1177 65.2
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1369.8 1185 64.4
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1366.3 1172 64.7
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1361.7 1182 64.6
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1357.0 1171 62.4
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1355.5 1184 64.4
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1350.1 1175 63.8
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1349.0 1182 64.2
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1347.8 1184 63.7
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1347.4 1184 63.8
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1337.4 1163 62.4
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1337.0 1164 63.2
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1332.4 1165 61.4
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1329.3 1143 63.1
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1328.2 1169 62.6
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1319.7 1196 62.4
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1315.8 1160 61.6
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1312.7 1164 62.3
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1308.1 1172 62.1
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1304.7 1166 62.1
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1303.5 1172 62.1
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1302.3 1177 60.6
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1300.4 1179 63.0
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1296.2 1186 60.5
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1292.7 1219 58.9
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1288.9 1160 60.6
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1288.1 1037 64.9
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1286.9 1190 59.7
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1282.7 1168 60.9
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1281.2 1170 61.4
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1275.8 1356 56.3
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1268.4 1147 61.6
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1263.8 1037 64.3
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1261.9 1168 60.4
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1261.5 1178 59.3
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1256.1 1184 58.9
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1250.0 1184 59.0
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1240.7 1183 58.6
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1233.8 1199 57.9
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1223.4 1175 57.4
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1220.7 1659 46.7
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1216.4 1170 57.9
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1214.9 1181 57.9
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1212.2 1170 57.6
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1211.4 1238 55.7
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1206.0 1138 59.1
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1197.6 1168 57.4
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1197.2 1104 61.8
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1192.9 1175 56.4
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1184.9 1164 56.4
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1182.9 1169 55.3
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1181.0 1174 56.7
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1179.5 1161 56.8
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1169.1 1175 55.1
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1167.9 1148 57.9
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1159.4 1176 56.9
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1159.4 1176 56.9
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1157.1 1162 56.4
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1156.4 1207 54.0
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1155.6 1201 55.8
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1152.1 1167 55.7
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1150.6 1173 55.4
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1149.8 946 62.9
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1149.4 1148 56.7
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1137.1 1169 55.3
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1125.5 1174 54.3
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1124.0 1174 55.2
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1117.4 994 59.0
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1115.9 1184 53.6
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1104.0 1159 55.2
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1102.4 1134 55.6
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 0.0e+00 1094.3 1228 51.6
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 3.2e-311 1072.0 1178 52.2
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 2.4e-306 1055.8 1165 52.0
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 6.9e-306 1054.3 1075 57.0
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 7.6e-305 1050.8 1035 54.1
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 2.1e-294 1016.1 1035 52.4
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 2.0e-289 999.6 1030 51.7
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 2.5e-263 912.9 982 52.6
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 1.5e-255 887.1 1174 45.9
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.5e-247 859.8 715 60.7
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 5.5e-247 858.6 734 61.9
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 2.5e-239 833.2 1207 42.8
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 9.5e-239 831.2 837 57.2
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 1.6e-222 777.3 1081 44.5
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 6.2e-222 775.4 630 63.0
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 6.2e-214 748.8 658 61.1
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.1e-213 748.0 657 61.0
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 2.0e-196 690.6 1035 40.8
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 6.6e-192 675.6 801 50.6
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.9e-191 674.1 954 40.7
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 8.7e-184 648.7 664 55.4
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 4.3e-183 646.4 1014 38.0
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.2e-178 630.2 1067 36.9
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 4.5e-172 609.8 1053 36.5
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 1.1e-170 605.1 489 63.8
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 1.0e-139 502.3 1235 30.4
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 1.0e-112 412.5 433 53.8
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 6.0e-100 370.2 433 54.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.8e-59 235.7 275 43.6
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 9.6e-58 229.9 179 63.1
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 1.7e-38 166.0 116 67.2
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 1.1e-32 146.7 502 26.5
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 1.7e-17 96.3 95 47.4
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.1e-16 93.6 71 63.4
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 1.8e-16 92.8 168 33.9
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 1.5e-13 83.2 81 54.3
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 4.7e-12 78.2 84 48.8
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 3.0e-11 75.5 61 60.7
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 7.0e-08 64.3 39 74.4
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 1.6e-07 63.2 89 42.7
Lsat_1_v5_gn_5_105340 Lactuca sativa HOM05D006302 ORTHO05D007960 4.5e-07 61.6 77 41.6
Cpa.g.sc7.124 Carica papaya HOM05D006302 ORTHO05D007960 7.7e-07 60.8 173 42.8
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 1.7e-06 59.7 47 59.6
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 8.6e-06 57.4 36 75.0
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 8.6e-06 57.4 35 77.1


User provided reference genes

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