Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 8.3e-210 733.4 357 100.0
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 6.9e-156 554.3 332 83.1
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 4.5e-155 551.6 334 80.5
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 9.3e-153 543.9 307 84.4
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 2.1e-152 542.7 341 78.0
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 6.6e-151 537.7 306 82.7
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 1.9e-150 536.2 308 84.4
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 3.3e-150 535.4 355 75.8
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 4.3e-150 535.0 308 82.8
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 7.4e-150 534.3 305 82.6
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 2.1e-149 532.7 363 73.8
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 2.8e-149 532.3 308 83.1
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 8.1e-149 530.8 313 80.8
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.4e-148 530.0 313 80.8
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.8e-148 529.6 305 82.6
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 3.1e-148 528.9 308 80.5
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 5.3e-148 528.1 303 81.2
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 9.0e-148 527.3 305 81.6
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 1.7e-146 523.1 314 80.6
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 1.7e-146 523.1 315 79.4
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 8.4e-146 520.8 326 78.5
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 1.1e-145 520.4 307 82.7
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 1.9e-145 519.6 309 79.0
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 3.2e-145 518.8 320 77.2
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 4.2e-145 518.5 308 81.5
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 5.5e-145 518.1 328 76.2
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 5.5e-145 518.1 317 79.5
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 7.1e-145 517.7 317 79.5
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 7.1e-145 517.7 349 71.6
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 9.3e-145 517.3 305 81.6
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 1.2e-144 516.9 328 76.2
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 2.1e-144 516.2 308 79.9
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 4.6e-144 515.0 307 78.5
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 4.6e-144 515.0 307 79.8
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 5.1e-143 511.5 319 74.9
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 1.1e-142 510.4 307 78.5
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.5e-142 510.0 314 78.3
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 1.9e-142 509.6 317 77.6
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 4.3e-142 508.4 311 76.5
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 5.6e-142 508.1 319 75.5
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 5.6e-142 508.1 306 80.4
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 1.3e-141 506.9 307 78.2
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 3.7e-141 505.4 319 74.3
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 4.8e-141 505.0 308 79.2
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 6.2e-141 504.6 345 70.1
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 1.1e-140 503.8 310 76.1
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 2.4e-140 502.7 305 77.4
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 3.1e-140 502.3 368 67.7
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 9.0e-140 500.7 314 75.5
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 1.2e-139 500.4 308 76.9
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 1.5e-139 500.0 304 76.6
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 1.5e-139 500.0 305 80.3
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.6e-139 499.2 313 78.0
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 4.5e-139 498.4 308 77.3
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 4.5e-139 498.4 308 76.6
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 2.2e-138 496.1 333 72.1
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 2.2e-138 496.1 333 72.1
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 3.8e-138 495.4 304 76.6
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 3.8e-138 495.4 305 77.0
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 4.9e-138 495.0 308 76.3
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 3.2e-137 492.3 308 75.6
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 4.2e-137 491.9 304 75.7
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.2e-136 490.3 373 66.5
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 2.3e-135 486.1 304 76.3
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 3.0e-135 485.7 309 74.8
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 3.0e-135 485.7 308 75.0
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 3.9e-135 485.3 304 77.3
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 5.1e-135 485.0 309 74.8
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 3.3e-134 482.3 305 77.7
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 4.8e-133 478.4 315 72.7
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 3.1e-132 475.7 333 70.9
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.6e-131 472.6 280 81.1
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 1.7e-130 469.9 325 70.8
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 2.9e-130 469.2 308 73.7
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 3.8e-130 468.8 308 73.7
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 1.4e-129 466.8 305 73.8
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 5.5e-129 464.9 309 72.8
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 5.5e-129 464.9 306 74.8
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 7.2e-129 464.5 305 73.4
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 1.2e-128 463.8 315 74.0
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 2.1e-128 463.0 343 69.4
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 2.7e-128 462.6 286 78.7
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 3.6e-128 462.2 273 78.8
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 1.0e-127 460.7 291 74.2
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 8.7e-127 457.6 318 69.8
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 1.1e-126 457.2 318 69.5
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.9e-126 456.4 304 74.3
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 3.3e-126 455.7 318 68.6
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 1.1e-124 450.7 318 69.5
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 3.1e-124 449.1 312 69.6
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 2.6e-123 446.0 333 64.6
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 2.2e-122 443.0 360 62.8
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 1.4e-121 440.3 304 72.0
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 2.1e-120 436.4 248 86.7
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.8e-119 433.3 319 67.4
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 8.8e-119 431.0 303 66.7
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 3.3e-118 429.1 305 70.5
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 9.7e-118 427.6 248 82.7
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 4.8e-117 425.2 339 59.9
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 8.5e-114 414.5 248 77.4
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 7.9e-112 407.9 385 58.7
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 4.4e-110 402.1 301 62.5
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 1.3e-109 400.6 319 63.6
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 2.8e-109 399.4 332 60.2
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 1.1e-108 397.5 352 60.5
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 2.0e-107 393.3 319 63.3
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 6.5e-106 388.3 230 79.6
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 2.5e-105 386.3 308 64.6
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 2.1e-104 383.3 355 57.2
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 1.5e-102 377.1 343 57.1
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 2.7e-91 339.7 356 51.1
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 3.5e-91 339.3 346 51.7
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 3.5e-91 339.3 319 57.4
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 3.5e-91 339.3 308 57.1
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 5.5e-89 332.0 254 68.1
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 1.6e-88 330.5 187 81.8
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 2.8e-88 329.7 255 67.8
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 2.2e-85 320.1 306 53.6
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 2.3e-79 300.1 308 52.3
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 1.1e-73 281.2 183 72.1
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 3.3e-73 279.6 163 80.4
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 8.0e-72 275.0 171 78.9
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 5.2e-71 272.3 152 84.2
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 9.8e-70 268.1 195 67.2
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.6e-46 190.3 121 74.4
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 2.6e-46 190.3 121 74.4
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 7.6e-46 188.7 120 74.2
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 8.4e-37 158.7 91 82.4
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 7.1e-36 155.6 286 37.1
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 4.6e-35 152.9 91 79.1
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 7.9e-35 152.1 91 80.2
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 3.1e-31 140.2 202 45.5
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 4.6e-27 126.3 287 31.7
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.1e-20 105.1 164 39.6
Sopen03g028940 Solanum pennellii HOM05D005071 ORTHO05D006069 1.4e-20 104.8 69 72.5
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 5.5e-20 102.8 295 29.5
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 3.1e-15 87.0 195 35.9
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 7.6e-14 82.4 145 35.2
SMO203G0085 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 2.2e-13 80.9 287 25.8
unitig_699.g19941 Utricularia gibba HOM05D002671 ORTHO05D001380 2.5e-12 77.4 303 26.7
CiPaw.02G181900 Carya illinoinensis HOM05D005071 ORTHO05D006069 9.3e-12 75.5 47 76.6
GSVIVG01012590001 Vitis vinifera HOM05D005071 ORTHO05D006069 1.2e-11 75.1 46 69.6
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 2.7e-11 73.9 296 26.7
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 3.9e-10 70.1 326 22.4
BcaC05g27571 Brassica carinata HOM05D005071 ORTHO05D031708 1.5e-09 68.2 44 72.7
C05p35540 Brassica napus HOM05D005071 ORTHO05D031708 1.5e-09 68.2 44 72.7
BolC5t32266H Brassica oleracea HOM05D005071 ORTHO05D031708 1.5e-09 68.2 44 72.7
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 9.7e-09 65.5 216 28.2
SMO203G0059 Selaginella moellendorffii HOM05D006855 ORTHO05D008695 1.8e-07 61.2 287 24.0
PRCOL_00002385 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 2.0e-06 57.8 228 25.4


User provided reference genes

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