Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 8.0e-180 633.6 320 100.0
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.4e-139 500.0 317 79.5
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 2.3e-139 499.2 286 85.3
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 3.1e-139 498.8 286 85.3
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 2.6e-138 495.7 277 88.1
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 7.6e-138 494.2 317 78.9
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 7.6e-138 494.2 311 78.8
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 4.9e-137 491.5 278 85.6
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 4.1e-136 488.4 336 75.6
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 4.1e-136 488.4 302 81.5
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-135 486.9 278 84.9
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-135 486.9 278 84.9
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.6e-135 486.5 317 77.3
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 2.1e-135 486.1 278 84.2
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.7e-135 485.7 317 77.3
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 4.6e-135 485.0 282 84.4
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 7.8e-135 484.2 283 84.5
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 2.3e-134 482.6 287 81.2
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 2.3e-134 482.6 318 74.5
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.3e-134 482.6 318 76.4
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 2.3e-134 482.6 284 83.5
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 3.0e-134 482.3 282 83.0
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 3.9e-134 481.9 295 81.4
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 3.9e-134 481.9 282 83.0
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 5.1e-134 481.5 282 83.7
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 5.1e-134 481.5 302 80.5
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 1.5e-133 479.9 276 84.8
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.9e-133 479.6 282 83.3
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.3e-133 478.4 273 84.2
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 5.6e-133 478.0 276 83.7
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 7.3e-133 477.6 316 75.9
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 7.3e-133 477.6 324 74.1
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 9.6e-133 477.2 276 83.7
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 9.6e-133 477.2 276 84.1
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 1.6e-132 476.5 297 80.8
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.6e-132 475.3 304 78.3
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.6e-132 475.3 276 83.3
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 3.6e-132 475.3 276 83.0
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 3.6e-132 475.3 276 83.3
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 3.6e-132 475.3 276 83.3
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 3.6e-132 475.3 284 80.6
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 8.1e-132 474.2 276 83.0
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 8.1e-132 474.2 276 83.3
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 8.1e-132 474.2 276 83.3
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 8.1e-132 474.2 276 83.0
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 8.1e-132 474.2 275 83.3
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.4e-131 473.4 285 81.4
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.4e-131 473.4 276 83.0
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.8e-131 473.0 276 82.6
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 2.4e-131 472.6 306 77.8
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 3.1e-131 472.2 276 82.6
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 4.0e-131 471.9 336 72.0
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 4.0e-131 471.9 284 81.7
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 6.9e-131 471.1 285 80.4
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 8.9e-131 470.7 295 78.3
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 8.9e-131 470.7 301 78.4
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 2.6e-130 469.2 285 80.7
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 2.6e-130 469.2 274 82.1
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 3.4e-130 468.8 276 81.9
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 4.4e-130 468.4 271 83.8
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 4.4e-130 468.4 276 82.6
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 5.8e-130 468.0 276 81.9
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 7.6e-130 467.6 276 81.2
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 7.6e-130 467.6 282 81.9
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 9.9e-130 467.2 276 81.2
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 1.3e-129 466.8 274 81.8
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.3e-129 466.8 319 73.7
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.3e-129 466.8 276 81.5
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 1.7e-129 466.5 286 80.1
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.1e-128 463.8 285 79.3
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 5.4e-128 461.5 285 78.9
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 7.1e-128 461.1 284 79.2
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 9.3e-128 460.7 283 79.2
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 9.3e-128 460.7 285 78.2
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.2e-127 460.3 284 79.6
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.1e-127 459.5 281 81.5
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 2.7e-127 459.1 279 81.4
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 4.6e-127 458.4 291 76.3
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 4.6e-127 458.4 282 80.1
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 6.0e-127 458.0 282 79.8
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 6.0e-127 458.0 282 79.1
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 6.0e-127 458.0 285 77.2
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 7.8e-127 457.6 282 79.4
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 1.0e-126 457.2 291 77.0
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.3e-126 456.8 283 78.4
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.7e-126 456.4 284 80.3
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.7e-126 456.4 282 79.8
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 3.9e-126 455.3 317 72.2
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 5.1e-126 454.9 274 80.7
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 5.1e-126 454.9 314 72.0
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 6.6e-126 454.5 290 76.2
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 8.7e-126 454.1 304 74.3
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 8.7e-126 454.1 282 79.1
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.5e-125 453.4 276 78.6
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.5e-125 452.6 289 76.1
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 4.3e-125 451.8 291 76.3
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 4.3e-125 451.8 278 79.9
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 7.3e-125 451.1 290 76.6
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.3e-124 450.3 274 78.8
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.3e-124 450.3 308 73.1
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 2.1e-124 449.5 276 79.0
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 1.4e-123 446.8 282 78.4
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 4.0e-123 445.3 282 77.3
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.5e-122 443.4 272 77.9
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 2.0e-122 443.0 269 79.2
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 2.0e-122 443.0 280 76.8
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.0e-122 443.0 291 75.6
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 2.6e-122 442.6 282 76.6
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 2.6e-122 442.6 265 80.0
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 3.4e-122 442.2 284 76.8
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.7e-121 439.9 278 76.6
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 2.2e-121 439.5 290 73.8
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 2.9e-121 439.1 276 78.6
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 6.4e-121 438.0 327 69.4
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 1.9e-120 436.4 275 76.4
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 4.2e-120 435.3 274 77.4
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 7.1e-120 434.5 278 75.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 1.2e-119 433.7 291 71.1
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 7.9e-119 431.0 283 72.8
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.8e-118 429.9 318 67.6
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 2.3e-118 429.5 284 75.0
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 5.1e-118 428.3 272 77.6
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 5.6e-117 424.9 262 79.0
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 1.1e-115 420.6 274 77.4
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 1.2e-114 417.2 279 74.2
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 9.9e-114 414.1 270 75.9
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 8.4e-113 411.0 279 71.3
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 4.2e-112 408.7 279 71.3
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 4.6e-111 405.2 279 69.9
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 1.8e-110 403.3 265 74.3
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 2.3e-110 402.9 306 67.6
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 2.5e-109 399.4 269 71.7
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.4e-109 397.9 282 72.3
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.6e-108 396.7 260 73.8
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 5.3e-107 391.7 284 69.7
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.6e-103 380.2 286 64.7
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 8.2e-100 367.9 224 78.1
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 5.5e-96 355.1 277 63.5
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 3.0e-94 349.4 275 60.7
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 9.7e-93 344.4 276 59.4
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 1.8e-91 340.1 186 88.2
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 3.6e-87 325.9 234 71.8
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 3.1e-83 312.8 282 58.9
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 1.0e-81 307.8 194 77.8
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.5e-80 303.1 293 51.5
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 5.2e-78 295.4 271 60.5
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 6.7e-78 295.0 274 50.4
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 4.4e-77 292.4 288 54.5
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.1e-71 271.9 239 64.9
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.3e-68 264.2 218 64.7
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 4.8e-68 262.3 174 77.0
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.2e-63 247.7 220 64.5
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 8.3e-60 235.0 159 74.2
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.7e-58 228.4 123 89.4
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 7.5e-53 211.8 253 50.2
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 1.6e-50 204.1 159 63.5
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 1.1e-48 198.0 175 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.7e-42 176.8 200 49.0
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 6.8e-38 162.2 90 85.6
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.7e-36 157.5 138 58.7
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 8.6e-33 145.2 77 88.3
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 8.9e-30 135.2 280 31.1
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.1e-26 124.0 68 88.2
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 2.7e-26 123.6 75 78.7
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.0e-25 121.7 158 47.5
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 6.6e-25 119.0 89 65.2
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 3.6e-23 113.2 164 40.9
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.9e-20 103.6 66 80.3
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.1e-15 87.4 83 53.0
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 5.8e-13 79.3 181 29.8
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 7.8e-10 68.9 86 46.5
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 1.1e-06 58.5 57 42.1
Nn1g07592 Nelumbo nucifera HOM05D004037 ORTHO05D004744 5.3e-06 56.2 30 90.0


User provided reference genes

Program Settings