Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 1.4e-50 202.6 101 100.0
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.0e-24 115.2 107 62.6
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 3.7e-14 81.6 100 53.0
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 6.3e-14 80.9 101 48.5
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 1.1e-13 80.1 75 58.7
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 1.8e-13 79.3 100 50.0
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 2.6e-12 75.5 75 57.3
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.5e-12 75.1 87 54.0
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 5.9e-12 74.3 59 66.1
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 5.9e-12 74.3 59 66.1
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 7.7e-12 73.9 90 48.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 2.2e-11 72.4 78 55.1
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.9e-11 72.0 88 51.1
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 3.8e-11 71.6 90 50.0
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 6.5e-11 70.9 78 56.4
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 6.5e-11 70.9 58 65.5
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 1.9e-10 69.3 75 53.3
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.5e-10 68.9 71 59.2
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 2.5e-10 68.9 79 50.6
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 3.2e-10 68.6 74 48.6
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 3.2e-10 68.6 82 52.4
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 5.5e-10 67.8 87 47.1
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 5.5e-10 67.8 87 47.1
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 5.5e-10 67.8 86 48.8
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 5.5e-10 67.8 68 52.9
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 5.5e-10 67.8 77 53.2
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 7.2e-10 67.4 101 40.6
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 9.4e-10 67.0 100 40.0
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 1.2e-09 66.6 64 56.2
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 1.6e-09 66.2 81 49.4
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 1.6e-09 66.2 89 50.6
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.6e-09 66.2 88 42.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.1e-09 65.9 89 49.4
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 2.1e-09 65.9 95 44.2
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 2.7e-09 65.5 96 44.8
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 3.6e-09 65.1 90 42.2
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 3.6e-09 65.1 101 39.6
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.6e-09 65.1 67 52.2
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 3.6e-09 65.1 60 55.0
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 3.6e-09 65.1 62 61.3
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 4.7e-09 64.7 85 43.5
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.7e-09 64.7 94 43.6
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 4.7e-09 64.7 79 46.8
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 4.7e-09 64.7 91 47.3
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 4.7e-09 64.7 79 51.9
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 6.1e-09 64.3 90 42.2
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 6.1e-09 64.3 89 46.1
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 8.0e-09 63.9 85 43.5
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 8.0e-09 63.9 55 63.6
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 1.0e-08 63.5 93 41.9
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 1.0e-08 63.5 85 42.4
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 1.0e-08 63.5 85 42.4
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 1.0e-08 63.5 85 42.4
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 1.0e-08 63.5 85 42.4
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 1.0e-08 63.5 73 46.6
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.4e-08 63.2 105 39.0
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 1.4e-08 63.2 102 37.3
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 1.4e-08 63.2 61 60.7
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 1.8e-08 62.8 89 43.8
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 2.3e-08 62.4 88 46.6
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.3e-08 62.4 78 46.2
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 2.3e-08 62.4 56 60.7
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 3.0e-08 62.0 80 48.8
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 3.0e-08 62.0 56 60.7
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 4.0e-08 61.6 100 38.0
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 4.0e-08 61.6 77 50.6
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 5.2e-08 61.2 44 65.9
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 5.2e-08 61.2 61 60.7
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 5.2e-08 61.2 82 50.0
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 6.7e-08 60.8 95 46.3
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 8.8e-08 60.5 72 51.4
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 8.8e-08 60.5 72 51.4
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 8.8e-08 60.5 72 51.4
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 8.8e-08 60.5 72 51.4
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 8.8e-08 60.5 72 51.4
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 8.8e-08 60.5 68 48.5
Psat2g084240 Pisum sativum HOM05D007247 ORTHO05D009208 1.5e-07 59.7 47 61.7
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 2.0e-07 59.3 73 47.9
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 2.0e-07 59.3 79 49.4
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 2.0e-07 59.3 54 57.4
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 2.6e-07 58.9 84 42.9
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 2.6e-07 58.9 78 42.3
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.6e-07 58.9 67 52.2
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 3.3e-07 58.5 49 57.1
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 5.7e-07 57.8 93 40.9
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 5.7e-07 57.8 64 54.7
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 5.7e-07 57.8 55 58.2
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 7.5e-07 57.4 74 44.6
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 7.5e-07 57.4 56 58.9
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 7.5e-07 57.4 89 40.4
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 1.3e-06 56.6 93 41.9
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 1.3e-06 56.6 93 40.9
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.3e-06 56.6 67 50.7
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.3e-06 56.6 67 50.7
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 1.3e-06 56.6 44 61.4
Duzib251G0560 Durio zibethinus HOM05D007247 ORTHO05D009208 1.7e-06 56.2 47 55.3
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 1.7e-06 56.2 44 61.4
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 2.2e-06 55.8 36 66.7
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 2.2e-06 55.8 93 40.9
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.2e-06 55.8 74 41.9
HanXRQChr03g0080371 Helianthus annuus HOM05D007247 ORTHO05D009208 2.2e-06 55.8 66 48.5
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 2.8e-06 55.5 36 66.7
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 2.8e-06 55.5 36 66.7
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 2.8e-06 55.5 104 38.5
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 3.7e-06 55.1 46 63.0
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 3.7e-06 55.1 46 63.0
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 3.7e-06 55.1 77 41.6
Dinv14726 Davidia involucrata HOM05D007247 ORTHO05D009208 3.7e-06 55.1 64 43.8
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 3.7e-06 55.1 82 45.1
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 4.8e-06 54.7 38 65.8
VMungo0251G0750 Vigna mungo HOM05D007247 ORTHO05D009208 4.8e-06 54.7 44 59.1
Carub.0002s1440 Capsella rubella HOM05D007247 ORTHO05D009208 6.3e-06 54.3 56 51.8
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 6.3e-06 54.3 74 44.6
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.3e-06 54.3 91 42.9
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 6.3e-06 54.3 91 42.9
Lsat_1_v5_gn_9_89061 Lactuca sativa HOM05D007247 ORTHO05D009208 6.3e-06 54.3 48 58.3
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 8.2e-06 53.9 56 44.6
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 8.2e-06 53.9 97 37.1
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 8.2e-06 53.9 53 49.1


User provided reference genes

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