Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G200100 Manihot esculenta HOM05D002733 ORTHO05D010023 3.6e-219 764.6 384 100.0
Manes.02G136900 Manihot esculenta HOM05D002733 ORTHO05D010023 2.1e-110 403.3 416 56.5
Thecc.09G246300 Theobroma cacao HOM05D002733 ORTHO05D010023 2.4e-66 256.9 418 42.8
Potri.001G274000 Populus trichocarpa HOM05D002733 ORTHO05D010023 4.6e-65 252.7 394 44.2
Sabra16G0168800 Salix brachista HOM05D002733 ORTHO05D010023 1.7e-64 250.8 402 43.3
Gohir.A07G121200 Gossypium hirsutum HOM05D002733 ORTHO05D010023 5.8e-52 209.1 388 41.0
Gorai.001G135300 Gossypium raimondii HOM05D002733 ORTHO05D010023 2.2e-51 207.2 390 40.0
QL01p016685 Quercus lobata HOM05D002733 ORTHO05D010023 1.1e-50 204.9 408 38.0
Gohir.D07G125500 Gossypium hirsutum HOM05D002733 ORTHO05D010023 1.9e-50 204.1 390 39.5
Potri.009G068200 Populus trichocarpa HOM05D002733 ORTHO05D010023 2.4e-50 203.8 379 41.2
CiPaw.13G148700 Carya illinoinensis HOM05D002733 ORTHO05D010023 1.0e-40 171.8 408 37.7
Dinv04578 Davidia involucrata HOM05D002733 ORTHO05D010023 1.0e-40 171.8 403 35.2
COL.COLO4_02755 Corchorus olitorius HOM05D002733 ORTHO05D010023 1.6e-38 164.5 394 34.8
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 1.4e-37 161.4 396 36.4
Ciclev10017459m.g Citrus clementina HOM05D002733 ORTHO05D010023 1.0e-35 155.2 377 36.3
Prupe.4G260600 Prunus persica HOM05D002733 ORTHO05D010023 2.9e-35 153.7 411 34.5
Atru.chr3.3004 Acer truncatum HOM05D002733 ORTHO05D010023 3.8e-35 153.3 424 36.3
MD00G1045800 Malus domestica HOM05D002733 ORTHO05D010023 1.1e-34 151.8 392 32.1
Eucgr.J00677 Eucalyptus grandis HOM05D002733 ORTHO05D010023 1.9e-34 151.0 403 33.0
Hma1.2p1_0460F.1_g157570 Hydrangea macrophylla HOM05D002733 ORTHO05D010023 1.2e-33 148.3 413 33.7
Cfa009898 Carpinus fangiana HOM05D002733 ORTHO05D010023 4.6e-33 146.4 409 34.5
MD03G1164300 Malus domestica HOM05D002733 ORTHO05D010023 5.1e-32 142.9 392 31.6
DCAR_029984 Daucus carota HOM05D002733 ORTHO05D010023 1.1e-31 141.7 398 31.7
TWI79G0642 Tripterygium wilfordii HOM05D002733 ORTHO05D010023 4.3e-31 139.8 389 35.0
Medtr5g089100 Medicago truncatula HOM05D002733 ORTHO05D010023 9.7e-31 138.7 394 34.8
Psat0s1289g0080 Pisum sativum HOM05D002733 ORTHO05D010023 1.6e-30 137.9 394 34.5
TAR369G1143 Trochodendron aralioides HOM05D002733 ORTHO05D010023 4.8e-30 136.3 390 30.8
Glyma.14G036400 Glycine max HOM05D002733 ORTHO05D010023 8.2e-30 135.6 384 33.1
Dinv36151 Davidia involucrata HOM05D002733 ORTHO05D010023 2.4e-29 134.0 344 35.5
Glyma.02G278200 Glycine max HOM05D002733 ORTHO05D010023 5.3e-29 132.9 344 35.2
LjContig00564g0023278 Lotus japonicus HOM05D002733 ORTHO05D010023 9.1e-29 132.1 389 32.1
CANSAT54G1196 Cannabis sativa HOM05D002733 ORTHO05D010023 2.6e-28 130.6 418 31.6
Oeu025912.1 Olea europaea HOM05D002733 ORTHO05D010023 3.8e-27 126.7 395 31.4
TPR.G16419 Trifolium pratense HOM05D002733 ORTHO05D010023 8.5e-27 125.6 389 31.9
Lalb_Chr10g0106141 Lupinus albus HOM05D002733 ORTHO05D010023 7.2e-26 122.5 375 33.6
Migut.D00675 Erythranthe guttata HOM05D002733 ORTHO05D010023 2.3e-24 117.5 328 32.9
arahy.Tifrunner.gnm1.ann1.88337C Arachis hypogaea HOM05D002733 ORTHO05D010023 3.0e-24 117.1 417 28.8
RcHm_v2.0_Chr6g0258931 Rosa chinensis HOM05D002733 ORTHO05D010023 1.1e-23 115.2 375 31.5
arahy.Tifrunner.gnm1.ann1.MI3W0U Arachis hypogaea HOM05D002733 ORTHO05D010023 4.4e-23 113.2 418 28.5
Phvul.008G165900 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 4.4e-23 113.2 371 33.4
FAN15G1799 Fragaria x ananassa HOM05D002733 ORTHO05D010023 7.4e-23 112.5 377 29.7
MSTRG.18469 Avicennia marina HOM05D002733 ORTHO05D010023 9.7e-23 112.1 374 30.7
Sabra09G0051300 Salix brachista HOM05D002733 ORTHO05D010023 1.3e-22 111.7 95 61.1
Phvul.008G202700 Phaseolus vulgaris HOM05D002733 ORTHO05D010023 1.1e-21 108.6 350 33.1
Actinidia06978 Actinidia chinensis HOM05D002733 ORTHO05D010023 4.1e-21 106.7 189 40.7
FAN27G2498 Fragaria x ananassa HOM05D002733 ORTHO05D010023 9.1e-21 105.5 369 31.4
Dinv36152 Davidia involucrata HOM05D000362 ORTHO05D000325 1.2e-20 105.1 171 43.9
FAN20G0750 Fragaria x ananassa HOM05D002733 ORTHO05D010023 1.5e-20 104.8 377 28.9
FvH4_2g06740 Fragaria vesca HOM05D002733 ORTHO05D010023 3.4e-20 103.6 377 30.0
FAN24G3374 Fragaria x ananassa HOM05D002733 ORTHO05D010023 5.9e-20 102.8 378 28.8
VMungo0647G1446 Vigna mungo HOM05D002733 ORTHO05D010023 7.7e-20 102.4 384 31.2
ClCG02G022730 Citrullus lanatus HOM05D002733 ORTHO05D010023 1.0e-19 102.1 304 33.2
MELO3C014550.2 Cucumis melo HOM05D002733 ORTHO05D010023 5.0e-19 99.8 302 32.8
Sed0027264 Sechium edule HOM05D002733 ORTHO05D010023 6.5e-19 99.4 210 36.7
CsaV3_6G038850 Cucumis sativus L. HOM05D002733 ORTHO05D010023 1.1e-18 98.6 252 34.5
Nitab4.5_0007012g0030 Nicotiana tabacum HOM05D018239 ORTHO05D010023 1.1e-18 98.6 404 28.7
Ca_06190_v3 Cicer arietinum L. HOM05D002733 ORTHO05D010023 3.2e-18 97.1 279 35.5
ECA238G3721 Erigeron canadensis HOM05D002733 ORTHO05D010023 4.2e-18 96.7 397 29.0
Peaxi162Scf00004g00424 Petunia axillaris HOM05D018239 ORTHO05D010023 9.4e-18 95.5 406 30.5
CAN.G468.8 Capsicum annuum HOM05D018239 ORTHO05D010023 1.4e-16 91.7 403 30.0
MBI13_g09212_MAGBIO Magnolia biondii HOM05D002733 ORTHO05D010023 3.0e-16 90.5 379 28.0
PGR102G0853 Punica granatum HOM05D002733 ORTHO05D010023 2.6e-15 87.4 377 28.6
Aqoxy2G00438 Aquilegia oxysepala HOM05D002733 ORTHO05D010023 5.7e-15 86.3 394 29.9
Lsat_1_v5_gn_2_32340 Lactuca sativa HOM05D002733 ORTHO05D010023 5.7e-15 86.3 372 28.0
PGR119G1676 Punica granatum HOM05D002733 ORTHO05D010023 1.7e-14 84.7 367 29.2
PGSC0003DMG400009447 Solanum tuberosum HOM05D018239 ORTHO05D010023 2.2e-14 84.3 406 28.8
Sopen11g024780 Solanum pennellii HOM05D018239 ORTHO05D010023 4.1e-13 80.1 404 28.7
TAR633G0275 Trochodendron aralioides HOM05D002733 ORTHO05D010023 1.6e-12 78.2 177 33.9
Solyc11g065010.1 Solanum lycopersicum HOM05D018239 ORTHO05D010023 2.0e-12 77.8 400 28.2
Lsat_1_v5_gn_2_32520 Lactuca sativa HOM05D002733 ORTHO05D010023 3.5e-12 77.0 207 34.3
Ah.06g194720 Amaranthus hybridus HOM05D002733 ORTHO05D010023 4.5e-12 76.6 208 32.7
Nitab4.5_0006764g0040 Nicotiana tabacum HOM05D018239 ORTHO05D010023 1.7e-11 74.7 395 27.3
Rhsim13G0206300 Rhododendron simsii HOM05D002733 ORTHO05D010023 2.9e-11 73.9 304 29.9
AUR62000212 Chenopodium quinoa HOM05D002733 ORTHO05D010023 7.2e-10 69.3 213 32.9
HanXRQChr03g0090311 Helianthus annuus HOM05D002733 ORTHO05D010023 9.4e-10 68.9 354 28.5
AUR62006558 Chenopodium quinoa HOM05D002733 ORTHO05D010023 1.8e-08 64.7 384 26.6
Dinv41084 Davidia involucrata HOM05D002733 ORTHO05D010023 3.0e-08 63.9 133 36.8
Lsat_1_v5_gn_3_109980 Lactuca sativa HOM05D002733 ORTHO05D010023 5.2e-08 63.2 197 32.0
ATR0307G041 Amborella trichopoda HOM05D002733 ORTHO05D010023 2.0e-07 61.2 360 26.1
Sc16g0010940 Simmondsia chinensis HOM05D002733 ORTHO05D010023 3.3e-07 60.5 210 31.0
SGA_v2.0_scaffold29G12225 Striga asiatica HOM05D002733 ORTHO05D010023 5.7e-07 59.7 141 34.8
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 9.7e-07 58.9 267 27.3


User provided reference genes

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