Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 1.5e-235 819.3 462 100.0
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 5.7e-219 764.2 463 93.1
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 4.1e-201 704.9 459 85.2
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 1.5e-200 703.0 459 84.7
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 5.9e-200 701.0 462 85.9
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 7.7e-200 700.7 462 83.5
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 1.3e-199 699.9 459 84.1
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 5.5e-198 694.5 462 85.1
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.4e-196 689.9 459 83.9
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 2.3e-196 689.1 462 85.5
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 3.0e-196 688.7 464 77.8
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.0e-196 688.7 462 85.3
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 3.0e-196 688.7 462 84.2
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 3.3e-195 685.3 462 85.5
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 3.7e-194 681.8 461 84.8
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 4.8e-194 681.4 462 84.8
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 8.2e-194 680.6 462 83.8
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 7.0e-193 677.6 462 84.0
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 9.1e-193 677.2 462 85.1
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.5e-192 675.2 462 83.5
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 5.9e-192 674.5 462 82.5
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 1.7e-191 672.9 462 81.8
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 3.8e-191 671.8 464 82.3
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 9.4e-190 667.2 462 83.3
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 1.2e-189 666.8 465 82.4
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.0e-187 659.4 460 83.5
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 7.5e-187 657.5 460 83.3
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 2.8e-186 655.6 463 79.7
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.7e-186 655.2 462 79.9
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 1.1e-185 653.7 461 80.5
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 1.4e-185 653.3 462 80.3
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 2.4e-185 652.5 462 79.4
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 2.4e-185 652.5 459 81.0
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 2.4e-185 652.5 460 82.0
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 9.1e-185 650.6 463 81.4
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.9e-184 647.9 462 79.0
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 1.0e-183 647.1 460 81.3
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.3e-183 646.7 459 81.0
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 1.7e-183 646.4 458 79.5
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 5.0e-183 644.8 462 79.2
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 8.5e-183 644.0 460 79.1
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 8.5e-183 644.0 459 79.7
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 2.5e-182 642.5 460 79.3
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.2e-182 641.7 461 78.3
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 4.2e-182 641.7 459 80.0
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 9.4e-182 640.6 462 80.1
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 2.1e-181 639.4 459 73.2
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 2.1e-181 639.4 459 73.2
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 2.7e-181 639.0 459 80.4
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 2.7e-181 639.0 459 80.2
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 4.7e-181 638.3 462 79.0
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 8.0e-181 637.5 441 83.7
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 8.0e-181 637.5 462 79.2
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 1.0e-180 637.1 504 69.2
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 2.3e-180 636.0 462 79.7
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 4.0e-180 635.2 454 79.7
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 8.8e-180 634.0 462 79.7
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.2e-179 633.6 462 79.2
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 2.6e-179 632.5 462 77.7
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 4.4e-179 631.7 462 79.0
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 5.7e-179 631.3 466 78.1
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 9.8e-179 630.6 462 78.6
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 1.3e-178 630.2 460 78.9
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 2.8e-178 629.0 462 78.4
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.8e-177 626.3 462 77.3
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.3e-175 620.2 462 75.5
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 1.9e-174 616.3 462 76.6
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.6e-173 613.2 459 74.7
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 2.7e-173 612.5 459 76.3
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 3.6e-173 612.1 464 77.6
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 3.6e-173 612.1 459 76.5
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 3.6e-173 612.1 493 73.6
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 4.7e-173 611.7 460 77.0
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 6.1e-173 611.3 464 77.4
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 8.0e-173 610.9 460 77.2
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 3.0e-172 609.0 483 72.7
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 4.0e-172 608.6 476 74.2
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 2.0e-171 606.3 462 76.6
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 9.8e-171 604.0 551 67.3
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-170 603.6 462 76.6
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.3e-170 603.6 462 75.3
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.3e-170 601.3 462 75.1
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.8e-169 599.7 462 76.0
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 5.4e-169 598.2 462 76.6
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 7.7e-168 594.3 463 75.2
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.5e-166 590.1 462 74.5
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.0e-164 583.9 461 73.8
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 3.4e-163 578.9 456 74.6
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 7.5e-163 577.8 466 73.0
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 8.3e-162 574.3 456 74.1
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 8.3e-162 574.3 456 74.1
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 2.4e-161 572.8 456 73.5
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 5.9e-160 568.2 465 66.5
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 6.6e-159 564.7 462 67.1
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 8.6e-159 564.3 461 71.6
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 1.6e-157 560.1 387 73.1
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 4.0e-156 555.4 388 73.5
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 5.8e-155 551.6 387 72.6
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 1.9e-153 546.6 463 62.9
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 4.1e-153 545.4 462 69.5
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 2.0e-152 543.1 382 81.9
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 2.7e-152 542.7 389 72.2
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 2.1e-149 533.1 461 68.3
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 4.7e-149 531.9 460 69.3
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 3.1e-148 529.3 388 70.9
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 5.4e-145 518.5 459 67.5
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 1.6e-144 516.9 496 65.7
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 1.1e-142 510.8 384 77.1
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 3.6e-141 505.8 462 61.7
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 4.4e-139 498.8 465 64.7
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 1.9e-137 493.4 462 67.1
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 7.8e-136 488.0 463 64.8
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 1.3e-119 434.1 462 58.9
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 1.5e-118 430.6 364 63.7
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.1e-113 414.5 467 54.4
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 3.8e-106 389.4 300 66.7
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 9.0e-100 368.2 331 64.0
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 7.6e-99 365.2 462 49.4
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 1.7e-82 310.8 290 69.3
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.5e-67 260.0 396 40.9
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 6.5e-66 255.8 460 42.2
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 3.6e-56 223.4 189 67.7
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 4.7e-56 223.0 242 52.5
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 3.7e-53 213.4 505 39.4
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 2.1e-48 197.6 163 66.9
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 6.1e-48 196.1 151 70.2
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.3e-45 188.3 123 74.8
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 3.5e-43 180.3 402 30.8
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 1.4e-39 168.3 121 75.2
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 5.2e-39 166.4 503 35.2
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 2.0e-38 164.5 134 62.7
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 7.8e-35 152.5 156 57.7
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 2.8e-24 117.5 220 38.6
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 1.4e-23 115.2 94 63.8
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 2.6e-22 110.9 101 89.1
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 2.3e-18 97.8 68 77.9
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 9.6e-17 92.4 55 89.1
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 1.2e-16 92.0 120 46.7
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 4.9e-13 80.1 111 47.7
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 7.1e-12 76.3 58 65.5
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 1.0e-10 72.4 60 63.3
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 1.0e-10 72.4 59 61.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.3e-10 71.2 113 43.4
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 5.1e-10 70.1 59 61.0
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 5.1e-10 70.1 65 55.4
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 8.7e-10 69.3 97 47.4
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 4.3e-09 67.0 50 80.0
SHI12865 Sapria himalayana HOM05D002357 ORTHO05D002676 6.9e-07 59.7 256 21.5
Psat1g145560 Pisum sativum HOM05D005230 ORTHO05D006506 1.2e-06 58.9 90 44.4
Peaxi162Scf00225g00424 Petunia axillaris HOM05D004145 ORTHO05D004879 1.5e-06 58.5 407 20.9
CAN.G134.208 Capsicum annuum HOM05D004145 ORTHO05D004879 4.5e-06 57.0 407 20.6
GSVIVG01026774001 Vitis vinifera HOM05D004145 ORTHO05D004879 5.8e-06 56.6 247 23.5


User provided reference genes

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