Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 0.0e+00 2232.2 1152 100.0
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.2e-188 664.8 1241 41.7
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.1e-185 654.1 1096 44.1
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 2.6e-180 637.1 1243 40.3
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 7.1e-170 602.4 1105 42.4
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 2.6e-148 530.8 1146 39.0
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 1.4e-146 525.0 1210 38.1
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.4e-141 508.4 1131 37.6
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.8e-141 508.1 1231 36.1
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 7.2e-122 443.0 1083 36.8
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.1e-121 441.4 1152 35.2
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 1.8e-120 438.3 1047 36.0
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 4.4e-111 407.1 1136 34.6
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.2e-110 404.8 1080 33.1
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.8e-110 404.4 1218 32.9
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.1e-109 402.5 1132 34.1
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 3.5e-108 397.5 1218 32.8
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 1.0e-104 386.0 1071 34.4
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.2e-103 382.5 1063 33.8
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 9.1e-101 372.9 1043 33.8
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 3.8e-99 367.5 1269 31.3
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 3.3e-98 364.4 1323 30.7
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.0e-96 357.8 1127 32.6
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.2e-94 351.7 1145 32.0
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 1.4e-93 349.0 1050 33.0
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.1e-93 347.8 1030 32.3
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.9e-90 338.6 1100 32.9
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.6e-90 337.0 1101 33.0
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 2.2e-86 325.1 1100 30.2
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.2e-84 319.3 1133 29.1
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 1.5e-82 312.4 1224 29.9
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 1.4e-80 305.8 1137 30.6
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 1.4e-80 305.8 1080 31.0
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 2.3e-80 305.1 1148 30.4
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 4.0e-80 304.3 1112 31.2
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.4e-77 295.8 1096 29.7
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 1.2e-76 292.7 1061 30.4
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 2.1e-76 292.0 1219 29.3
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 3.5e-76 291.2 1136 30.9
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.0e-75 289.7 1206 28.5
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.0e-75 289.7 1052 31.0
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.0e-75 289.7 1099 31.0
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.3e-75 289.3 1139 30.0
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 2.3e-75 288.5 758 35.1
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.3e-75 288.5 1042 30.7
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 3.0e-75 288.1 538 41.6
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 3.3e-74 284.6 1068 30.6
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 7.3e-74 283.5 1033 31.5
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 9.5e-74 283.1 1201 28.0
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.6e-73 282.3 1122 30.7
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 3.6e-73 281.2 1078 29.9
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.1e-72 279.6 1040 31.3
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.4e-72 279.3 1066 30.2
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.0e-72 277.7 1031 30.7
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 5.2e-72 277.3 918 31.8
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 6.4e-70 270.4 1148 28.9
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.9e-69 268.9 1035 30.3
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.0e-67 263.1 1048 29.6
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.3e-67 261.9 1026 30.3
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.9e-66 258.8 784 34.2
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.5e-66 258.5 1040 30.2
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 9.5e-66 256.5 1030 29.8
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 4.7e-65 254.2 1034 29.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.9e-58 232.3 1072 29.0
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.6e-58 230.7 413 42.9
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 5.6e-58 230.7 1043 28.4
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 5.6e-58 230.7 620 34.7
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 7.6e-55 220.3 813 30.9
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 7.1e-53 213.8 1053 26.9
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.3e-53 213.4 998 29.8
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.9e-50 205.7 515 36.5
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 2.1e-49 202.2 1065 27.2
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 2.8e-49 201.8 933 29.0
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.2e-49 200.7 729 29.9
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 8.1e-49 200.3 1108 27.2
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.4e-48 198.7 1108 27.2
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 4.0e-48 198.0 394 40.4
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 4.5e-47 194.5 1054 26.7
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 1.2e-44 186.4 1123 25.0
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 2.7e-44 185.3 238 50.0
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 1.0e-43 183.3 1263 25.7
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.8e-43 182.6 1038 26.6
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 3.9e-43 181.4 230 48.7
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 6.7e-43 180.6 1119 26.5
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.7e-41 174.9 1075 25.3
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 3.1e-40 171.8 335 38.8
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.3e-38 166.4 166 60.2
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 3.2e-37 161.8 925 25.6
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 5.5e-37 161.0 230 46.1
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 2.7e-36 158.7 997 26.5
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 3.3e-34 151.8 329 40.7
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.5e-31 142.9 211 43.6
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 1.9e-29 136.0 100 62.0
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 9.3e-29 133.7 1036 25.3
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.6e-28 132.9 433 31.6
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 6.1e-28 131.0 97 60.8
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 6.1e-28 131.0 197 46.2
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.3e-27 129.8 230 43.0
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.8e-27 129.4 1051 26.3
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.5e-26 126.3 81 71.6
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 8.2e-25 120.6 220 40.0
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.1e-24 120.2 137 50.4
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.3e-24 117.9 1044 25.9
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.2e-23 116.7 235 36.2
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 2.6e-23 115.5 1098 25.0
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 3.4e-23 115.2 1035 24.0
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 7.7e-23 114.0 1030 23.7
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 7.7e-23 114.0 373 31.6
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 2.2e-22 112.5 98 52.0
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 2.2e-22 112.5 1038 22.9
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 1.4e-21 109.8 1008 24.6
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 2.5e-21 109.0 127 46.5
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 3.9e-19 101.7 1016 22.5
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 9.7e-18 97.1 70 58.6
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.3e-17 96.7 57 68.4
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 3.1e-16 92.0 95 47.4
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 3.1e-16 92.0 1022 22.8
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 5.3e-16 91.3 345 31.9
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 5.3e-16 91.3 76 61.8
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 3.4e-15 88.6 75 53.3
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 4.5e-15 88.2 78 55.1
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 4.5e-15 88.2 78 55.1
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 7.7e-15 87.4 217 30.9
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 4.2e-13 81.6 58 60.3
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 1.6e-12 79.7 114 40.4
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.6e-12 79.7 114 40.4
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 3.9e-11 75.1 177 32.8
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 5.1e-11 74.7 1010 23.6
Mapoly0034s0131 Marchantia polymorpha HOM05D005839 ORTHO05D005686 5.1e-11 74.7 213 26.3
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 8.8e-11 73.9 59 55.9
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 2.0e-10 72.8 363 27.5
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 5.7e-10 71.2 84 39.3
Actinidia24785 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.7e-09 69.7 253 27.7
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 1.7e-09 69.7 1017 22.9
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 3.7e-09 68.6 272 28.3
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 3.7e-09 68.6 36 72.2
Actinidia04544 Actinidia chinensis HOM05D005839 ORTHO05D005686 6.3e-09 67.8 70 57.1
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 6.3e-09 67.8 55 54.5
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 1.8e-08 66.2 161 31.7
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 2.0e-07 62.8 272 28.3
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 2.6e-07 62.4 307 25.4
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 3.5e-07 62.0 1049 23.0
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 1.3e-06 60.1 358 26.8
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 2.2e-06 59.3 840 22.4


User provided reference genes

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