Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 1.4e-83 312.8 146 100.0
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 6.2e-71 270.8 147 85.0
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 9.0e-70 266.9 146 82.9
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 1.5e-69 266.2 147 83.7
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 7.6e-69 263.8 146 80.1
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 4.9e-68 261.2 146 80.1
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 8.4e-68 260.4 146 80.8
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 2.4e-67 258.8 146 79.5
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 2.4e-67 258.8 146 78.8
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 2.4e-67 258.8 147 80.3
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 3.2e-67 258.5 147 81.6
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 3.2e-67 258.5 146 81.5
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 7.1e-67 257.3 146 78.1
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 7.1e-67 257.3 148 81.8
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 9.3e-67 256.9 147 81.0
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 9.3e-67 256.9 147 81.0
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 1.2e-66 256.5 147 79.6
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 80.1
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 80.1
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 2.7e-66 255.4 146 78.8
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 7.8e-66 253.8 147 80.3
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 1.3e-65 253.1 140 81.4
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.3e-65 253.1 147 78.9
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.3e-65 252.3 146 77.4
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 3.0e-65 251.9 145 77.2
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.1e-64 250.0 146 76.7
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 2.5e-64 248.8 148 80.4
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.5e-64 248.8 148 78.4
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 5.6e-64 247.7 146 76.7
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 5.6e-64 247.7 146 77.4
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.3e-63 246.5 146 76.0
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 1.6e-63 246.1 146 74.7
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.8e-63 245.4 147 75.5
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 2.8e-63 245.4 146 77.4
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 3.6e-63 245.0 146 78.1
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 3.6e-63 245.0 146 77.4
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 4.8e-63 244.6 146 77.4
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 4.8e-63 244.6 146 74.0
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 76.0
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 6.2e-63 244.2 146 76.0
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 8.1e-63 243.8 146 76.0
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 73.3
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 75.3
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 75.3
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.1e-62 243.4 146 75.3
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 1.4e-62 243.0 146 72.6
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 1.4e-62 243.0 150 78.7
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.8e-62 242.7 146 71.9
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 1.8e-62 242.7 146 76.7
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.8e-62 242.7 147 75.5
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 1.8e-62 242.7 146 75.3
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 3.1e-62 241.9 146 74.0
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 72.6
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.0e-62 241.5 146 72.6
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 4.0e-62 241.5 147 76.2
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 72.6
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 73.3
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.3e-62 241.1 148 75.0
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 5.3e-62 241.1 146 75.3
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 6.9e-62 240.7 146 73.3
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 6.9e-62 240.7 146 73.3
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 6.9e-62 240.7 146 76.0
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 74.0
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 71.9
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 1.2e-61 240.0 146 75.3
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 70.5
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.5e-61 239.6 146 74.7
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 2.6e-61 238.8 148 73.6
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.6e-61 238.8 146 72.6
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 3.4e-61 238.4 146 72.6
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 3.4e-61 238.4 144 73.6
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 3.4e-61 238.4 148 74.3
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 4.5e-61 238.0 146 73.3
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 74.0
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 5.8e-61 237.7 147 72.1
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 5.8e-61 237.7 146 71.9
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 1.3e-60 236.5 146 70.5
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 1.7e-60 236.1 150 72.0
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.2e-60 235.7 147 73.5
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 2.2e-60 235.7 146 71.9
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 8.4e-60 233.8 146 71.9
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 8.4e-60 233.8 146 74.0
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 8.4e-60 233.8 147 71.4
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.4e-59 233.0 146 72.6
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.4e-59 233.0 132 80.3
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.4e-59 233.0 132 80.3
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.4e-59 233.0 147 74.1
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.4e-59 233.0 147 74.1
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 1.4e-59 233.0 148 74.3
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.2e-59 231.5 132 79.5
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 9.3e-59 230.3 145 68.3
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.2e-58 229.9 148 73.6
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.2e-58 229.9 137 76.6
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.6e-58 229.6 147 71.4
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.6e-58 229.6 148 69.6
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 2.1e-58 229.2 149 72.5
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.7e-58 228.8 146 72.6
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 2.7e-58 228.8 146 68.5
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 3.5e-58 228.4 149 71.1
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 3.5e-58 228.4 140 72.1
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 3.5e-58 228.4 146 69.9
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 6.0e-58 227.6 149 71.1
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 1.0e-57 226.9 146 69.2
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 2.3e-57 225.7 125 80.0
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 3.9e-57 224.9 146 71.2
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 6.7e-57 224.2 147 71.4
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 6.7e-57 224.2 147 71.4
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 8.7e-57 223.8 129 77.5
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 8.7e-57 223.8 147 72.1
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 8.7e-57 223.8 147 72.1
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 8.7e-57 223.8 147 70.7
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.9e-56 222.6 150 70.7
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 3.3e-56 221.9 131 72.5
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.3e-55 219.9 151 69.5
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.6e-55 219.5 148 70.9
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 2.1e-55 219.2 150 69.3
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 2.8e-55 218.8 147 67.3
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 1.1e-54 216.9 137 72.3
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.8e-54 216.1 147 71.4
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 6.9e-54 214.2 150 66.7
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 6.9e-54 214.2 150 66.7
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.2e-53 213.4 146 61.6
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.5e-53 213.0 150 68.7
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 4.9e-52 208.0 146 65.8
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 1.4e-51 206.5 150 66.7
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 1.4e-51 206.5 150 66.7
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 1.4e-51 206.5 150 66.7
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.9e-51 206.1 117 76.9
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 1.9e-51 206.1 146 60.3
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 4.2e-51 204.9 150 67.3
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 5.5e-51 204.5 150 66.7
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 5.5e-51 204.5 151 63.6
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 7.1e-51 204.1 150 68.0
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 9.3e-51 203.8 132 72.7
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 9.3e-51 203.8 148 66.2
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 9.3e-51 203.8 148 66.2
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 9.3e-51 203.8 148 66.2
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 4.6e-50 201.4 132 71.2
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.3e-49 199.9 122 72.1
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 3.0e-49 198.7 146 63.7
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.3e-47 193.4 146 62.3
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.1e-46 190.3 151 61.6
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 5.7e-40 167.9 101 75.2
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 2.8e-39 165.6 101 73.3
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 6.3e-39 164.5 146 59.6
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 5.3e-38 161.4 146 54.8
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.2e-37 160.2 146 58.2
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 2.6e-37 159.1 97 77.3
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.4e-35 153.3 148 52.0
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 2.5e-32 142.5 137 52.6
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 6.7e-25 117.9 115 53.0
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 1.5e-24 116.7 153 41.8
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.3e-20 103.6 67 68.7
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.2e-20 102.8 75 65.3
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 1.6e-18 96.7 90 50.0
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 2.7e-10 69.3 91 35.2
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 3.0e-09 65.9 37 70.3


User provided reference genes

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