Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 5.3e-54 214.2 112 100.0
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 4.7e-26 121.3 122 61.5
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 1.8e-14 82.8 124 45.2
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 3.5e-13 78.6 108 49.1
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 4.5e-13 78.2 116 47.4
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 1.3e-12 76.6 101 46.5
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 1.7e-12 76.3 102 44.1
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 1.7e-12 76.3 116 48.3
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.7e-12 76.3 108 46.3
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 2.2e-12 75.9 99 50.5
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 2.9e-12 75.5 118 44.1
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 3.8e-12 75.1 114 50.0
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 3.8e-12 75.1 102 46.1
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 3.8e-12 75.1 122 43.4
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 3.8e-12 75.1 105 47.6
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 5.0e-12 74.7 105 41.9
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 1.1e-11 73.6 113 46.0
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 2.5e-11 72.4 108 43.5
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 2.5e-11 72.4 110 46.4
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 2.5e-11 72.4 73 56.2
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 4.2e-11 71.6 109 44.0
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 4.2e-11 71.6 116 42.2
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 5.5e-11 71.2 109 44.0
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 7.2e-11 70.9 84 47.6
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 7.2e-11 70.9 89 46.1
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 9.4e-11 70.5 109 44.0
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 9.4e-11 70.5 108 42.6
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 1.2e-10 70.1 109 45.0
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 1.2e-10 70.1 113 46.0
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 1.2e-10 70.1 73 56.2
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 1.2e-10 70.1 97 45.4
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 1.6e-10 69.7 106 41.5
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 2.1e-10 69.3 104 43.3
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 2.1e-10 69.3 109 43.1
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 2.1e-10 69.3 115 45.2
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 2.1e-10 69.3 111 44.1
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 2.1e-10 69.3 54 66.7
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 2.1e-10 69.3 108 49.1
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 2.1e-10 69.3 91 45.1
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 2.7e-10 68.9 109 44.0
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 2.7e-10 68.9 104 43.3
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 2.7e-10 68.9 109 42.2
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 3.6e-10 68.6 97 44.3
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 4.7e-10 68.2 105 42.9
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 8.0e-10 67.4 105 41.9
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 8.0e-10 67.4 74 52.7
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 8.0e-10 67.4 77 51.9
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 8.0e-10 67.4 74 52.7
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 1.0e-09 67.0 111 41.4
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 1.0e-09 67.0 49 69.4
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 1.4e-09 66.6 108 41.7
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 1.4e-09 66.6 108 41.7
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 1.4e-09 66.6 112 41.1
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 1.4e-09 66.6 55 60.0
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 1.4e-09 66.6 61 59.0
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 1.8e-09 66.2 90 44.4
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 1.8e-09 66.2 93 44.1
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 1.8e-09 66.2 106 43.4
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 1.8e-09 66.2 69 56.5
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 1.8e-09 66.2 88 45.5
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 3.0e-09 65.5 68 52.9
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 4.0e-09 65.1 110 40.9
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 4.0e-09 65.1 108 44.4
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 4.0e-09 65.1 51 62.7
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 4.0e-09 65.1 87 46.0
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 5.2e-09 64.7 98 44.9
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 5.2e-09 64.7 54 64.8
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 6.8e-09 64.3 87 46.0
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 6.8e-09 64.3 87 46.0
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 6.8e-09 64.3 76 47.4
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 8.8e-09 63.9 106 40.6
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 1.2e-08 63.5 88 46.6
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 1.2e-08 63.5 68 52.9
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 1.2e-08 63.5 99 41.4
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 1.5e-08 63.2 51 58.8
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 2.0e-08 62.8 100 40.0
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 2.6e-08 62.4 54 55.6
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.6e-08 62.4 66 56.1
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 2.6e-08 62.4 95 44.2
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 2.6e-08 62.4 105 41.9
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 3.4e-08 62.0 102 40.2
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 7.5e-08 60.8 71 47.9
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 1.3e-07 60.1 70 50.0
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 1.7e-07 59.7 56 57.1
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 1.7e-07 59.7 81 46.9
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 2.2e-07 59.3 71 43.7
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 3.7e-07 58.5 75 45.3
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 3.7e-07 58.5 58 48.3
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 4.8e-07 58.2 70 50.0
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 6.3e-07 57.8 87 41.4
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 6.3e-07 57.8 40 70.0
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 6.3e-07 57.8 107 39.3
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 1.1e-06 57.0 90 45.6
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 1.1e-06 57.0 64 45.3
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 2.4e-06 55.8 110 38.2
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 2.4e-06 55.8 110 38.2
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 3.1e-06 55.5 106 39.6
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 3.1e-06 55.5 51 58.8
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 4.1e-06 55.1 104 40.4
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 4.1e-06 55.1 104 40.4


User provided reference genes

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