Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 6.1e-64 247.3 121 100.0
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 3.1e-52 208.4 120 85.8
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 4.2e-49 198.0 122 78.7
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 4.2e-49 198.0 122 78.7
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 2.7e-48 195.3 123 78.9
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 6.1e-48 194.1 122 77.9
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.0e-47 193.4 122 77.0
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 1.8e-47 192.6 122 77.0
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 2.3e-47 192.2 122 77.9
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 3.0e-47 191.8 123 78.9
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 5.2e-47 191.0 124 76.6
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.2e-47 191.0 122 80.3
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 6.8e-47 190.7 118 78.0
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 6.8e-47 190.7 123 75.6
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 8.8e-47 190.3 122 79.5
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.5e-46 189.5 122 79.5
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 2.6e-46 188.7 118 78.8
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 2.6e-46 188.7 122 78.7
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.6e-46 188.7 122 78.7
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 2.6e-46 188.7 123 76.4
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 4.4e-46 188.0 120 77.5
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 5.7e-46 187.6 122 73.8
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 5.7e-46 187.6 122 73.8
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 7.5e-46 187.2 122 77.0
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 9.8e-46 186.8 122 77.0
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 9.8e-46 186.8 123 74.0
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 2.2e-45 185.7 122 76.2
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 1.1e-44 183.3 121 72.7
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.8e-44 182.6 123 72.4
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.8e-44 182.6 123 72.4
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.4e-44 182.2 118 76.3
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.4e-44 182.2 124 74.2
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 3.1e-44 181.8 120 74.2
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 4.1e-44 181.4 124 71.8
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 5.4e-44 181.0 118 74.6
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 5.4e-44 181.0 120 71.7
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 7.0e-44 180.6 121 71.9
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 1.6e-43 179.5 118 74.6
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.7e-43 178.7 121 71.9
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 2.7e-43 178.7 122 72.1
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 4.5e-43 177.9 127 71.7
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 5.9e-43 177.6 119 73.1
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 7.7e-43 177.2 121 71.1
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 1.0e-42 176.8 121 71.9
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 1.3e-42 176.4 123 70.7
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 1.7e-42 176.0 123 74.0
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.7e-42 176.0 120 71.7
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 2.2e-42 175.6 121 71.9
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 5.0e-42 174.5 125 75.2
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.1e-41 173.3 122 68.9
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 2.5e-41 172.2 122 70.5
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 9.5e-41 170.2 120 67.5
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.2e-40 169.9 122 68.0
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 2.1e-40 169.1 119 70.6
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 2.8e-40 168.7 131 67.2
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.8e-40 168.7 123 67.5
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 6.1e-40 167.5 124 67.7
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 8.0e-40 167.2 118 68.6
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 8.0e-40 167.2 124 66.9
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.8e-39 166.0 120 65.8
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 4.0e-39 164.9 123 65.0
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 4.0e-39 164.9 121 67.8
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 5.2e-39 164.5 122 66.4
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 8.8e-39 163.7 122 68.0
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.0e-38 162.5 122 64.8
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 2.6e-38 162.2 120 63.3
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 5.7e-38 161.0 119 68.9
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 7.5e-38 160.6 120 63.3
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.3e-37 159.8 129 65.1
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.7e-37 159.5 124 62.9
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.7e-37 159.5 125 64.8
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 2.8e-37 158.7 121 65.3
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 3.7e-37 158.3 122 62.3
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 6.3e-37 157.5 128 62.5
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 6.3e-37 157.5 120 63.3
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.1e-36 156.8 115 70.4
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 1.4e-36 156.4 120 63.3
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 4.1e-36 154.8 132 60.6
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 5.4e-36 154.5 123 63.4
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 9.2e-36 153.7 124 62.1
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.0e-35 152.5 120 61.7
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 4.5e-35 151.4 124 61.3
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 5.9e-35 151.0 126 61.9
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 7.8e-35 150.6 124 61.3
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 1.0e-34 150.2 124 61.3
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 1.3e-34 149.8 124 60.5
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 1.3e-34 149.8 124 60.5
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 1.3e-34 149.8 129 59.7
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.7e-34 149.4 126 62.7
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.3e-34 149.1 133 59.4
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 2.3e-34 149.1 123 58.5
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 2.9e-34 148.7 125 59.2
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 2.9e-34 148.7 124 60.5
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 3.8e-34 148.3 122 56.6
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 3.8e-34 148.3 125 61.6
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 5.0e-34 147.9 125 59.2
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 5.0e-34 147.9 125 59.2
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 6.6e-34 147.5 108 72.2
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 8.6e-34 147.1 127 59.1
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 8.6e-34 147.1 116 64.7
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.5e-33 146.4 125 58.4
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.5e-33 146.4 119 60.5
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.9e-33 146.0 120 59.2
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 4.3e-33 144.8 121 60.3
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.0e-31 140.2 125 55.2
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 1.8e-31 139.4 120 56.7
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.8e-31 139.4 119 55.5
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 1.8e-31 139.4 118 55.9
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.3e-31 139.0 123 58.5
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 3.0e-31 138.7 118 56.8
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 8.9e-31 137.1 120 57.5
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-30 136.0 124 54.8
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 3.4e-30 135.2 117 57.3
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 9.8e-30 133.7 121 57.0
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.3e-29 133.3 118 55.1
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 6.4e-29 131.0 121 55.4
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 9.2e-28 127.1 126 54.8
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-27 126.7 130 53.1
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.0e-26 123.6 128 52.3
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.0e-26 123.6 128 52.3
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 3.9e-26 121.7 117 57.3
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 6.6e-26 120.9 126 49.2
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 6.6e-26 120.9 126 49.2
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 8.6e-26 120.6 125 51.2
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 9.5e-25 117.1 100 58.0
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.0e-22 109.4 116 49.1
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 2.0e-22 109.4 133 41.4
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 2.9e-21 105.5 216 33.3
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 5.0e-18 94.7 103 47.6
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 6.6e-18 94.4 114 43.9
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 4.3e-17 91.7 115 47.8
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 7.3e-17 90.9 151 37.7
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.9e-13 79.0 90 51.1
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 6.4e-13 77.8 80 55.0
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 3.2e-12 75.5 80 53.8
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 7.1e-12 74.3 80 53.8
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 7.1e-12 74.3 152 34.2
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 1.2e-11 73.6 80 53.8
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 1.2e-11 73.6 80 53.8
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 2.7e-11 72.4 79 53.2
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 2.7e-11 72.4 79 53.2
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 2.7e-11 72.4 42 83.3
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 1.1e-09 67.0 57 59.6
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 8.1e-08 60.8 33 84.8


User provided reference genes

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