Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.2e-275 952.6 475 100.0
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 1.5e-227 792.7 469 84.2
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.2e-195 686.8 471 74.5
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 7.6e-195 684.1 471 73.2
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 4.6e-192 674.9 459 73.0
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.8e-191 672.9 471 73.0
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.9e-190 669.5 475 72.0
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 1.5e-187 659.8 474 71.5
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 7.7e-187 657.5 473 72.7
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 3.9e-183 645.2 475 72.0
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 5.3e-180 634.8 475 69.9
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.5e-179 633.3 475 69.7
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 6.5e-178 627.9 474 69.6
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 2.6e-174 615.9 493 67.1
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 1.2e-171 607.1 482 66.8
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 1.1e-169 600.5 459 69.3
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 4.0e-167 592.0 489 65.4
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 5.3e-164 581.6 462 66.9
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 9.1e-164 580.9 481 65.7
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 6.5e-162 574.7 481 63.4
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 8.0e-160 567.8 477 65.2
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.0e-159 567.4 469 64.6
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 7.5e-158 561.2 490 64.9
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 8.3e-157 557.8 441 65.5
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 4.5e-155 552.0 488 61.7
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 5.2e-151 538.5 478 60.9
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 6.8e-151 538.1 475 60.2
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 1.5e-150 537.0 491 59.9
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.5e-150 537.0 477 60.2
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 2.0e-150 536.6 499 59.7
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 9.8e-150 534.3 383 73.9
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 9.8e-150 534.3 477 59.7
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.2e-149 533.1 486 61.1
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 2.8e-149 532.7 484 63.4
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 4.9e-149 531.9 440 65.0
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 8.3e-149 531.2 481 61.7
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 9.2e-148 527.7 443 65.7
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.3e-146 523.1 478 59.6
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 6.6e-146 521.5 510 58.4
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 8.6e-146 521.2 508 58.9
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.6e-144 516.9 404 66.6
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.6e-144 516.9 404 66.8
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 6.1e-144 515.0 492 58.5
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 8.0e-144 514.6 404 66.3
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 2.3e-143 513.1 471 60.9
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 6.8e-143 511.5 474 59.9
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.5e-142 510.4 479 61.2
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 5.7e-142 508.4 481 60.9
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 7.5e-142 508.1 481 61.3
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 9.8e-142 507.7 482 61.4
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 9.8e-142 507.7 478 59.8
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 1.3e-141 507.3 479 60.8
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 2.2e-141 506.5 482 57.7
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 3.7e-141 505.8 436 61.7
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 1.1e-140 504.2 484 58.5
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 3.2e-140 502.7 480 59.2
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.7e-138 496.9 464 58.8
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 2.3e-138 496.5 484 57.4
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 3.0e-138 496.1 469 58.6
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 1.1e-137 494.2 499 55.7
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 2.5e-137 493.0 463 58.5
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 3.3e-137 492.7 493 57.2
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.4e-135 487.3 485 55.5
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.3e-135 486.5 435 62.5
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 3.4e-134 482.6 492 55.5
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 3.4e-134 482.6 492 57.3
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.3e-130 469.9 402 61.2
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 8.6e-130 468.0 489 56.2
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 3.3e-129 466.1 408 62.0
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 4.0e-127 459.1 495 52.9
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 5.2e-127 458.8 479 53.4
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 6.8e-127 458.4 465 55.3
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 2.6e-126 456.4 478 53.1
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 9.9e-126 454.5 465 54.6
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 4.9e-125 452.2 490 53.5
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 4.9e-125 452.2 481 53.4
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 1.6e-123 447.2 482 52.5
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 2.1e-123 446.8 444 56.3
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.7e-122 443.7 470 54.3
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 5.1e-122 442.2 475 54.3
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 6.6e-122 441.8 494 53.0
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 8.6e-122 441.4 485 52.6
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 1.5e-121 440.7 404 58.7
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 2.5e-121 439.9 464 53.9
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 5.6e-121 438.7 423 56.5
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 9.5e-121 438.0 471 51.2
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.2e-120 437.6 435 56.3
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 3.6e-120 436.0 486 52.9
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 2.4e-119 433.3 480 52.1
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 1.2e-118 431.0 396 59.6
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 6.4e-117 425.2 408 56.6
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 4.1e-116 422.5 451 53.0
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 3.0e-114 416.4 468 51.1
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.0e-114 416.4 354 64.1
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 1.6e-112 410.6 401 53.4
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 2.1e-112 410.2 475 50.1
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.3e-109 401.0 484 50.6
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.7e-109 400.6 484 50.2
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 1.4e-108 397.5 428 51.6
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 5.4e-108 395.6 465 52.0
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.0e-106 391.3 504 46.8
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 4.3e-105 386.0 390 57.2
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 2.8e-104 383.3 500 47.8
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 1.8e-103 380.6 491 45.0
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 4.9e-101 372.5 483 44.9
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 1.4e-100 370.9 491 46.2
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 4.6e-99 365.9 407 53.3
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 3.7e-96 356.3 490 44.5
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 3.7e-96 356.3 492 44.9
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 1.8e-95 354.0 394 54.8
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 5.3e-95 352.4 491 44.8
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 7.6e-94 348.6 301 61.1
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 2.2e-93 347.1 487 44.8
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.8e-93 346.3 475 46.7
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 1.4e-92 344.4 491 44.6
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 5.6e-89 332.4 463 45.4
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 4.0e-87 326.2 479 44.3
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 2.6e-86 323.6 208 78.4
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 3.4e-86 323.2 487 42.5
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 4.5e-86 322.8 239 68.2
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 1.7e-85 320.9 205 77.6
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.4e-79 300.4 463 41.5
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.1e-79 299.7 463 41.5
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 6.5e-77 292.4 453 40.8
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 6.7e-74 282.3 386 43.5
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 1.1e-73 281.6 381 40.2
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 3.3e-73 280.0 504 37.3
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 6.9e-71 272.3 479 38.2
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 4.7e-67 259.6 204 63.2
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.1e-63 248.4 414 38.6
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.9e-62 242.7 498 36.5
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.7e-61 241.1 501 35.5
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 1.2e-59 235.0 375 41.1
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 2.3e-58 230.7 169 67.5
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 5.7e-57 226.1 416 35.1
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.9e-52 211.1 445 34.6
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 9.4e-52 208.8 173 65.3
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 9.4e-52 208.8 173 65.3
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.6e-51 208.0 409 36.4
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.3e-48 198.4 473 34.0
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 5.0e-45 186.4 333 40.5
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.9e-44 184.5 333 39.9
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 6.1e-43 179.5 165 55.8
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.8e-42 177.9 163 55.2
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 8.8e-42 175.6 163 55.2
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.6e-41 174.1 439 30.8
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 4.4e-41 173.3 108 75.0
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.8e-39 167.9 307 38.4
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.8e-39 167.9 262 42.0
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.3e-37 161.0 391 33.0
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 2.1e-35 154.5 152 53.3
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 1.4e-34 151.8 162 46.3
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 3.0e-21 107.5 108 54.6
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 9.8e-17 92.4 258 30.2
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 3.9e-13 80.5 118 39.8
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.1e-07 60.5 110 29.1


User provided reference genes

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