Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G171900 Manihot esculenta HOM05D006157 ORTHO05D007826 5.1e-111 404.4 208 100.0
Manes.05G171901 Manihot esculenta HOM05D006157 ORTHO05D007826 5.1e-111 404.4 208 100.0
Manes.18G032700 Manihot esculenta HOM05D006157 ORTHO05D007826 2.2e-74 282.7 205 68.3
Potri.002G127800 Populus trichocarpa HOM05D006157 ORTHO05D007826 1.8e-68 263.1 209 63.6
Potri.014G032300 Populus trichocarpa HOM05D006157 ORTHO05D007826 1.0e-63 247.3 210 64.8
TWI56G1258 Tripterygium wilfordii HOM05D006157 ORTHO05D007826 1.3e-61 240.4 214 57.5
Sabra14G0022700 Salix brachista HOM05D006157 ORTHO05D007826 2.8e-61 239.2 210 59.5
QL02p005407 Quercus lobata HOM05D006157 ORTHO05D007826 1.2e-59 233.8 206 59.2
Cfa018525 Carpinus fangiana HOM05D006157 ORTHO05D007826 3.5e-59 232.3 206 60.7
Prupe.1G438800 Prunus persica HOM05D006157 ORTHO05D007826 6.6e-58 228.0 209 58.4
Duzib116G0710 Durio zibethinus HOM05D006157 ORTHO05D007826 1.1e-57 227.3 216 55.1
CiPaw.15G061800 Carya illinoinensis HOM05D006157 ORTHO05D007826 7.3e-57 224.6 209 62.7
Ciclev10002442m.g Citrus clementina HOM05D006157 ORTHO05D007826 1.6e-56 223.4 209 57.9
Ca_13302_v3 Cicer arietinum L. HOM05D006157 ORTHO05D007826 2.8e-56 222.6 206 55.3
Haze_17545 Corylus avellana HOM05D006157 ORTHO05D007826 3.6e-56 222.2 206 58.7
Haze_17554 Corylus avellana HOM05D006157 ORTHO05D007826 3.6e-56 222.2 206 58.7
vmacro21540 Vaccinium macrocarpon HOM05D006157 ORTHO05D007826 3.6e-56 222.2 213 54.0
Actinidia23263 Actinidia chinensis HOM05D006157 ORTHO05D007826 6.8e-55 218.0 214 53.3
TPR.G13684 Trifolium pratense HOM05D006157 ORTHO05D007826 3.4e-54 215.7 208 54.3
RcHm_v2.0_Chr6g0307431 Rosa chinensis HOM05D006157 ORTHO05D007826 9.8e-54 214.2 207 55.6
Psat6g012720 Pisum sativum HOM05D006157 ORTHO05D007826 3.7e-53 212.2 209 55.0
Medtr1g019800 Medicago truncatula HOM05D006157 ORTHO05D007826 4.9e-53 211.8 208 52.9
Gorai.010G017900 Gossypium raimondii HOM05D006157 ORTHO05D007826 6.4e-53 211.5 217 50.7
FAN15G3536 Fragaria x ananassa HOM05D006157 ORTHO05D007826 1.1e-52 210.7 209 56.5
Gohir.D06G015100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 1.1e-52 210.7 217 50.7
Gohir.A06G017000 Gossypium hirsutum HOM05D006157 ORTHO05D007826 4.1e-52 208.8 217 50.2
MELO3C010885.2 Cucumis melo HOM05D006157 ORTHO05D007826 1.2e-51 207.2 205 54.6
FAN27G0611 Fragaria x ananassa HOM05D006157 ORTHO05D007826 3.5e-51 205.7 209 58.4
FAN20G0621 Fragaria x ananassa HOM05D006157 ORTHO05D007826 6.0e-51 204.9 209 58.4
Sed0015883 Sechium edule HOM05D006157 ORTHO05D007826 6.0e-51 204.9 205 53.7
CsaV3_2G028070 Cucumis sativus L. HOM05D006157 ORTHO05D007826 1.0e-50 204.1 205 53.7
MD15G1085000 Malus domestica HOM05D006157 ORTHO05D007826 2.3e-50 203.0 207 51.7
Atru.chr13.647 Acer truncatum HOM05D006157 ORTHO05D007826 3.0e-50 202.6 218 54.1
Dinv35975 Davidia involucrata HOM05D006157 ORTHO05D007826 3.3e-49 199.1 223 52.0
Lj5g0002869 Lotus japonicus HOM05D006157 ORTHO05D007826 4.3e-49 198.7 204 56.9
Hma1.2p1_0718F.1_g208450 Hydrangea macrophylla HOM05D006157 ORTHO05D007826 1.2e-48 197.2 203 52.2
Cpa.g.c24415.4 Carica papaya HOM05D006157 ORTHO05D007826 8.0e-48 194.5 207 51.2
Sed0006561 Sechium edule HOM05D006157 ORTHO05D007826 8.0e-48 194.5 206 50.5
FvH4_2g34660 Fragaria vesca HOM05D006157 ORTHO05D007826 1.4e-47 193.7 211 56.9
Eucgr.F00242 Eucalyptus grandis HOM05D006157 ORTHO05D007826 8.9e-47 191.0 212 49.1
MD08G1103700 Malus domestica HOM05D006157 ORTHO05D007826 8.9e-47 191.0 208 53.4
Gorai.005G103500 Gossypium raimondii HOM05D006157 ORTHO05D007826 3.4e-46 189.1 209 48.8
Gohir.D02G092100 Gossypium hirsutum HOM05D006157 ORTHO05D007826 5.8e-46 188.3 209 48.3
CSS0004131 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 1.3e-45 187.2 224 46.9
Peaxi162Scf00064g00125 Petunia axillaris HOM05D006157 ORTHO05D007826 3.7e-45 185.7 205 45.9
Gohir.A03G079324 Gossypium hirsutum HOM05D006157 ORTHO05D007826 8.3e-45 184.5 209 47.8
ClCG08G015710 Citrullus lanatus HOM05D006157 ORTHO05D007826 1.1e-44 184.1 194 53.6
GSVIVG01009525001 Vitis vinifera HOM05D006157 ORTHO05D007826 1.9e-44 183.3 209 52.2
CANSAT54G0006 Cannabis sativa HOM05D006157 ORTHO05D007826 2.4e-44 183.0 208 48.6
Lalb_Chr14g0368791 Lupinus albus HOM05D006157 ORTHO05D007826 5.4e-44 181.8 208 52.9
VMungo1309G0335 Vigna mungo HOM05D006157 ORTHO05D007826 7.0e-44 181.4 201 48.8
Phvul.009G063700 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 9.2e-44 181.0 198 48.5
Nitab4.5_0001101g0070 Nicotiana tabacum HOM05D006157 ORTHO05D007826 1.2e-43 180.6 200 44.0
Nitab4.5_0000686g0050 Nicotiana tabacum HOM05D006157 ORTHO05D007826 2.1e-43 179.9 200 45.0
Glyma.04G037500 Glycine max HOM05D006157 ORTHO05D007826 2.7e-43 179.5 205 48.8
PGR083G2028 Punica granatum HOM05D006157 ORTHO05D007826 5.1e-42 175.3 211 46.4
Thecc.08G011200 Theobroma cacao HOM05D006157 ORTHO05D007826 8.6e-42 174.5 161 55.9
Nitab4.5_0000453g0220 Nicotiana tabacum HOM05D006157 ORTHO05D007890 3.3e-41 172.6 202 48.5
TAR628G1181 Trochodendron aralioides HOM05D006157 ORTHO05D007826 2.1e-40 169.9 206 43.7
Cc10_g04340 Coffea canephora HOM05D006157 ORTHO05D007826 3.6e-40 169.1 238 44.5
Glyma.06G038400 Glycine max HOM05D006157 ORTHO05D007826 3.6e-40 169.1 197 47.7
MSTRG.25101 Avicennia marina HOM05D006157 ORTHO05D007826 4.7e-40 168.7 208 43.3
Phvul.001G020800 Phaseolus vulgaris HOM05D006157 ORTHO05D007826 8.1e-40 167.9 211 47.9
PGSC0003DMG400036180 Solanum tuberosum HOM05D006157 ORTHO05D007826 1.2e-38 164.1 196 42.9
Nitab4.5_0004184g0060 Nicotiana tabacum HOM05D006157 ORTHO05D007890 5.8e-38 161.8 198 43.4
Lsat_1_v5_gn_4_124041 Lactuca sativa HOM05D006157 ORTHO05D007826 9.9e-38 161.0 215 44.7
Nn5g30225 Nelumbo nucifera HOM05D006157 ORTHO05D007826 2.2e-37 159.8 207 44.0
Glyma.17G243500 Glycine max HOM05D006157 ORTHO05D007826 2.9e-37 159.5 216 46.8
VMungo0647G0691 Vigna mungo HOM05D006157 ORTHO05D007826 2.9e-37 159.5 213 46.0
Peaxi162Scf00528g00414 Petunia axillaris HOM05D006157 ORTHO05D007826 6.4e-37 158.3 197 45.7
Sopen04g032780 Solanum pennellii HOM05D006157 ORTHO05D007826 8.3e-37 157.9 196 42.3
Glyma.14G081800 Glycine max HOM05D006157 ORTHO05D007826 1.4e-36 157.1 211 44.5
THA.LOC104806945 Tarenaya hassleriana HOM05D006157 ORTHO05D007826 3.2e-36 156.0 207 45.4
Rhsim06G0048100 Rhododendron simsii HOM05D006157 ORTHO05D007826 5.4e-36 155.2 214 43.9
Lj4C53T12 Lonicera japonica HOM05D006157 ORTHO05D007826 2.1e-35 153.3 201 46.8
EL10Ac1g01781 Beta vulgaris HOM05D006157 ORTHO05D007826 3.5e-35 152.5 231 40.7
AUR62022432 Chenopodium quinoa HOM05D006157 ORTHO05D007826 3.5e-35 152.5 220 41.8
Sopen12g030790 Solanum pennellii HOM05D006157 ORTHO05D007826 3.5e-35 152.5 205 43.9
Nn1g05836 Nelumbo nucifera HOM05D006157 ORTHO05D007826 5.1e-34 148.7 208 39.4
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 6.6e-34 148.3 149 50.3
HanXRQChr09g0267931 Helianthus annuus HOM05D006157 ORTHO05D007826 2.5e-33 146.4 214 42.5
SGA_v2.0_scaffold14G07032 Striga asiatica HOM05D006157 ORTHO05D007826 2.5e-33 146.4 210 41.0
AUR62039307 Chenopodium quinoa HOM05D006157 ORTHO05D007826 9.5e-33 144.4 207 40.1
ECA232G2668 Erigeron canadensis HOM05D006157 ORTHO05D007826 6.2e-32 141.7 211 42.2
Solyc12g088890.3 Solanum lycopersicum HOM05D006157 ORTHO05D007890 1.8e-31 140.2 172 49.4
SalBow8G3379 Salvia bowleyana HOM05D006157 ORTHO05D007826 5.8e-30 135.2 208 42.3
Solyc04g079170.4 Solanum lycopersicum HOM05D006157 ORTHO05D007826 5.8e-30 135.2 183 41.0
Aqoxy6G01361 Aquilegia oxysepala HOM05D006157 ORTHO05D007826 9.9e-30 134.4 207 40.6
MBI02_g17343_MAGBIO Magnolia biondii HOM05D006157 ORTHO05D007826 2.4e-28 129.8 205 40.5
Migut.C00597 Erythranthe guttata HOM05D006157 ORTHO05D007826 4.2e-28 129.0 210 40.5
Ah.05g168840 Amaranthus hybridus HOM05D006157 ORTHO05D007826 5.4e-28 128.6 183 43.7
Actinidia22616 Actinidia chinensis HOM05D006157 ORTHO05D007826 2.1e-27 126.7 157 48.4
PGSC0003DMG400015419 Solanum tuberosum HOM05D006157 ORTHO05D007826 6.0e-27 125.2 135 45.9
COL.COLO4_26474 Corchorus olitorius HOM05D006157 ORTHO05D007826 2.3e-26 123.2 208 37.0
CARHR037020 Cardamine hirsuta HOM05D006157 ORTHO05D007826 4.3e-25 119.0 195 42.6
Thhalv10011797m.g Eutrema salsugineum HOM05D006157 ORTHO05D007826 9.6e-25 117.9 201 37.8
AT1G47410 Arabidopsis thaliana HOM05D006157 ORTHO05D007826 1.6e-24 117.1 201 42.3
Aa31sc924G20 Aethionema arabicum HOM05D006157 ORTHO05D007826 2.8e-24 116.3 200 37.5
Sp1g34500 Schrenkiella parvula HOM05D006157 ORTHO05D007826 2.8e-24 116.3 199 38.7
SpUn0102_0020 Schrenkiella parvula HOM05D006157 ORTHO05D007826 2.8e-24 116.3 199 38.7
Carub.0001s3622 Capsella rubella HOM05D006157 ORTHO05D007826 3.6e-24 115.9 201 41.8
BcaB07g33839 Brassica carinata HOM05D006157 ORTHO05D007826 4.7e-24 115.5 196 39.8
Sc02g0007020 Simmondsia chinensis HOM05D006157 ORTHO05D007826 4.7e-24 115.5 221 40.7
AUR62019555 Chenopodium quinoa HOM05D006157 ORTHO05D007826 8.1e-24 114.8 157 42.0
A10p06400 Brassica napus HOM05D006157 ORTHO05D007826 3.1e-23 112.8 198 40.4
BolSC99t61279H Brassica oleracea HOM05D006157 ORTHO05D007826 5.3e-23 112.1 195 37.9
AL1G53700 Arabidopsis lyrata HOM05D006157 ORTHO05D007826 6.9e-23 111.7 192 42.2
Migut.N02699 Erythranthe guttata HOM05D006157 ORTHO05D007826 3.4e-22 109.4 215 38.1
C06p01910 Brassica napus HOM05D006157 ORTHO05D007826 4.4e-22 109.0 195 37.4
BcaC08g42947 Brassica carinata HOM05D006157 ORTHO05D007826 1.9e-20 103.6 100 55.0
PSO541G3363 Papaver somniferum HOM05D006157 ORTHO05D007826 4.2e-20 102.4 214 36.9
arahy.Tifrunner.gnm1.ann1.HUL940 Arachis hypogaea HOM05D006157 ORTHO05D007826 2.7e-19 99.8 215 39.5
arahy.Tifrunner.gnm1.ann1.R9H0NA Arachis hypogaea HOM05D006157 ORTHO05D007826 2.7e-19 99.8 215 39.5
Duzib093G2157 Durio zibethinus HOM05D006157 ORTHO05D007826 3.9e-18 95.9 93 51.6
PSO675G5393 Papaver somniferum HOM05D006157 ORTHO05D007826 2.1e-16 90.1 157 39.5
unitig_22.g6773 Utricularia gibba HOM05D006157 ORTHO05D007826 8.1e-16 88.2 185 35.1
ATR0100G006 Amborella trichopoda HOM05D006157 ORTHO05D007826 1.3e-13 80.9 154 34.4
ATR0100G061 Amborella trichopoda HOM05D006157 ORTHO05D007826 2.9e-13 79.7 156 35.3
CSS0005922 Camellia sinensis var. sinensis HOM05D006157 ORTHO05D007826 3.5e-11 72.8 150 37.3
Zm00001eb315050 Zea mays HOM05D006157 ORTHO05D007826 3.9e-10 69.3 242 26.0
FvH4_2g34701 Fragaria vesca HOM05D006157 ORTHO05D007826 1.9e-09 67.0 104 44.2
SalBow8G4867 Salvia bowleyana HOM05D006157 ORTHO05D007826 2.1e-08 63.5 34 76.5
Os09g0460100 Oryza sativa ssp. japonica HOM05D006157 ORTHO05D007826 1.2e-06 57.8 216 23.6
HPP92_027520 Vanilla planifolia HOM05D006157 ORTHO05D007826 2.0e-06 57.0 88 38.6
Zm00001eb100900 Zea mays HOM05D006157 ORTHO05D007826 7.6e-06 55.1 34 67.6


User provided reference genes

Program Settings