Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 1.5e-121 439.5 221 100.0
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.1e-111 406.8 220 94.5
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 8.4e-88 327.4 225 77.8
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 6.1e-86 321.2 225 73.3
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.4e-79 300.1 226 69.9
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 4.2e-79 298.5 225 68.9
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.0e-77 293.9 225 68.4
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 5.1e-77 291.6 226 68.6
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 9.7e-76 287.3 231 66.2
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.2e-75 286.2 231 66.2
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.2e-75 286.2 230 67.0
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 3.7e-75 285.4 226 66.4
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 3.4e-73 278.9 231 65.4
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 4.5e-73 278.5 227 65.6
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.7e-72 276.6 228 64.5
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 8.5e-72 274.2 227 60.8
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.1e-70 269.6 227 64.3
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 3.6e-70 268.9 234 63.2
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 4.7e-70 268.5 231 62.3
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 1.8e-69 266.5 234 62.0
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 3.9e-69 265.4 236 60.2
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 6.7e-69 264.6 226 61.5
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 6.7e-69 264.6 226 61.5
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.3e-67 260.4 223 61.0
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 1.1e-66 257.3 230 62.2
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.4e-66 256.9 235 62.1
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 2.4e-66 256.1 230 61.7
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.0e-66 254.6 227 62.1
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.2e-65 253.8 230 57.4
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 5.9e-65 251.5 232 57.3
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 7.7e-65 251.1 224 60.7
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 2.2e-64 249.6 224 56.7
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 3.8e-64 248.8 229 59.0
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.1e-63 247.3 229 60.3
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 1.5e-63 246.9 226 58.4
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.9e-63 246.5 232 56.5
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 1.9e-63 246.5 230 60.0
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 7.2e-63 244.6 226 54.9
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.2e-62 243.8 228 59.6
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 1.2e-62 243.8 230 57.4
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.7e-62 242.7 232 56.0
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 4.7e-62 241.9 227 57.3
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 8.0e-62 241.1 226 58.4
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 8.0e-62 241.1 170 68.8
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.0e-61 240.7 228 56.1
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.4e-61 240.4 233 55.4
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.8e-61 240.0 228 58.3
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.8e-61 240.0 233 56.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 1.8e-61 240.0 225 56.9
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 3.0e-61 239.2 225 58.2
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 4.0e-61 238.8 226 57.5
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 4.0e-61 238.8 170 68.2
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.2e-61 238.4 229 56.3
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 5.2e-61 238.4 229 56.3
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 8.8e-61 237.7 227 55.9
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.1e-60 237.3 229 59.0
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.1e-60 237.3 229 55.9
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.1e-60 237.3 234 55.6
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.0e-60 236.5 233 57.1
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.6e-60 236.1 223 58.7
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.3e-60 235.7 228 55.7
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 3.3e-60 235.7 234 56.4
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 4.4e-60 235.3 226 57.1
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.5e-60 234.6 228 57.9
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.5e-60 234.6 228 57.9
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.7e-60 234.2 170 69.4
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 9.7e-60 234.2 229 55.0
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.3e-59 233.8 166 69.9
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 1.7e-59 233.4 229 58.1
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.7e-59 233.4 166 69.3
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.7e-59 233.4 232 53.4
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 2.2e-59 233.0 225 53.8
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.8e-59 231.9 163 71.2
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 4.8e-59 231.9 166 69.3
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 8.2e-59 231.1 180 67.8
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 2.4e-58 229.6 234 54.7
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 3.1e-58 229.2 214 59.3
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 4.1e-58 228.8 236 56.8
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 4.1e-58 228.8 187 63.1
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 5.3e-58 228.4 228 56.6
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 5.3e-58 228.4 223 54.3
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 9.1e-58 227.6 189 59.3
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.2e-57 227.3 159 71.1
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 1.2e-57 227.3 232 53.4
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.2e-57 227.3 237 54.0
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.6e-57 226.9 230 56.5
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 1.6e-57 226.9 239 52.3
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 3.5e-57 225.7 230 56.1
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 4.5e-57 225.3 222 52.7
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 5.9e-57 224.9 227 54.2
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 7.7e-57 224.6 170 65.9
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 7.7e-57 224.6 230 56.1
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 7.7e-57 224.6 230 56.1
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 7.7e-57 224.6 226 54.4
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.0e-56 224.2 212 59.0
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.0e-56 224.2 212 59.0
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 1.7e-56 223.4 190 60.0
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 2.2e-56 223.0 160 68.8
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 2.2e-56 223.0 225 52.4
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 2.9e-56 222.6 173 64.2
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 3.8e-56 222.2 237 50.6
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.1e-55 220.7 225 53.8
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 1.5e-55 220.3 230 56.1
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 1.5e-55 220.3 237 49.8
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.9e-55 219.9 228 52.6
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.5e-55 219.5 163 68.1
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 4.2e-55 218.8 161 66.5
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 5.5e-55 218.4 230 52.2
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.1e-54 216.5 208 57.2
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.1e-54 216.5 223 54.3
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 4.7e-54 215.3 232 53.0
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 6.1e-54 214.9 232 52.6
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 8.0e-54 214.5 148 71.6
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.8e-53 213.4 199 57.8
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 6.8e-53 211.5 171 63.7
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 8.8e-53 211.1 197 55.3
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 8.8e-53 211.1 229 52.0
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.2e-52 210.7 163 63.8
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.6e-52 209.5 234 51.7
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 2.6e-52 209.5 232 52.6
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 9.8e-52 207.6 232 52.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 2.8e-51 206.1 198 56.1
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 3.7e-51 205.7 227 50.7
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 3.7e-51 205.7 226 49.6
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 1.1e-50 204.1 192 55.2
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 9.1e-50 201.1 195 53.8
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 9.1e-50 201.1 226 50.9
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 9.1e-50 201.1 220 50.5
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.2e-49 200.7 194 55.2
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.7e-49 198.0 133 74.4
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 8.5e-48 194.5 154 60.4
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-47 193.7 132 72.7
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 3.2e-47 192.6 190 54.2
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.0e-45 187.6 154 58.4
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 2.3e-45 186.4 163 57.1
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 6.8e-45 184.9 157 63.7
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.5e-44 183.7 128 69.5
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 1.7e-43 180.3 156 57.7
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.8e-42 176.8 158 53.2
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.6e-41 173.7 171 49.1
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 1.6e-38 163.7 111 71.2
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 5.7e-36 155.2 110 64.5
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 7.5e-36 154.8 118 66.1
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.1e-34 151.0 94 70.2
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 8.9e-29 131.3 150 48.7
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 4.9e-27 125.6 197 36.5
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 1.4e-26 124.0 198 35.9
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.1e-26 122.5 74 77.0
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.2e-25 120.9 157 38.9
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 2.3e-24 116.7 177 39.0
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 3.4e-20 102.8 139 39.6
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 6.0e-17 92.0 86 57.0
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 2.1e-14 83.6 102 49.0
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 7.6e-12 75.1 135 37.0
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 2.9e-11 73.2 93 43.0


User provided reference genes

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