Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 1.3e-41 172.9 110 100.0
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 1.2e-21 106.7 113 52.2
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.3e-20 103.2 81 58.0
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 1.4e-19 99.8 113 51.3
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 5.4e-19 97.8 85 63.5
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 1.6e-18 96.3 117 47.0
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.6e-18 96.3 115 49.6
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 2.7e-18 95.5 81 67.9
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 7.8e-18 94.0 121 50.4
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 1.0e-17 93.6 117 55.6
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 1.7e-17 92.8 115 47.0
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 1.7e-17 92.8 121 47.1
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 3.9e-17 91.7 120 50.8
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 3.9e-17 91.7 81 53.1
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 6.6e-17 90.9 80 55.0
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 6.6e-17 90.9 81 64.2
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 6.6e-17 90.9 115 53.9
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 8.7e-17 90.5 74 55.4
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 1.1e-16 90.1 75 53.3
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 1.1e-16 90.1 115 44.3
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 1.9e-16 89.4 104 47.1
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 2.5e-16 89.0 85 51.8
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 2.5e-16 89.0 118 44.9
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 5.6e-16 87.8 114 48.2
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 5.6e-16 87.8 85 51.8
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 7.3e-16 87.4 81 63.0
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 9.6e-16 87.0 78 48.7
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 1.2e-15 86.7 83 55.4
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 1.6e-15 86.3 114 45.6
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.6e-15 86.3 85 50.6
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 1.6e-15 86.3 83 61.4
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 2.1e-15 85.9 79 59.5
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 2.1e-15 85.9 79 59.5
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 3.6e-15 85.1 90 54.4
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 4.7e-15 84.7 118 43.2
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 6.2e-15 84.3 82 51.2
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 6.2e-15 84.3 109 45.0
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 6.2e-15 84.3 75 49.3
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 6.2e-15 84.3 75 50.7
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 6.2e-15 84.3 125 47.2
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 8.1e-15 84.0 85 49.4
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 8.1e-15 84.0 83 48.2
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 8.1e-15 84.0 90 60.0
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 8.1e-15 84.0 79 57.0
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 1.1e-14 83.6 75 49.3
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.1e-14 83.6 75 49.3
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 1.1e-14 83.6 78 51.3
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 1.4e-14 83.2 81 50.6
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 2.4e-14 82.4 81 50.6
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 2.4e-14 82.4 82 48.8
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 3.1e-14 82.0 95 53.7
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 3.1e-14 82.0 95 53.7
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 3.1e-14 82.0 63 60.3
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.1e-14 82.0 121 47.1
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.0e-14 81.6 81 46.9
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 4.0e-14 81.6 70 55.7
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 4.0e-14 81.6 118 42.4
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 6.9e-14 80.9 67 55.2
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 9.0e-14 80.5 82 47.6
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 9.0e-14 80.5 78 50.0
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 9.0e-14 80.5 81 58.0
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 9.0e-14 80.5 78 48.7
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 9.0e-14 80.5 86 50.0
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 1.2e-13 80.1 75 46.7
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 1.2e-13 80.1 77 57.1
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 1.2e-13 80.1 60 60.0
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 1.2e-13 80.1 74 54.1
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 1.2e-13 80.1 81 58.0
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 1.5e-13 79.7 78 57.7
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.0e-13 79.3 78 48.7
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.0e-13 79.3 78 48.7
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 2.6e-13 79.0 112 40.2
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 3.4e-13 78.6 83 48.2
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 3.4e-13 78.6 81 49.4
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 4.4e-13 78.2 82 48.8
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.4e-13 78.2 81 45.7
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 5.8e-13 77.8 83 49.4
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 5.8e-13 77.8 83 48.2
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 7.6e-13 77.4 83 48.2
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 7.6e-13 77.4 57 68.4
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 7.6e-13 77.4 85 45.9
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 9.9e-13 77.0 68 52.9
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 9.9e-13 77.0 81 44.4
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 1.3e-12 76.6 74 51.4
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 1.7e-12 76.3 57 68.4
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 2.2e-12 75.9 84 46.4
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 2.2e-12 75.9 74 50.0
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.9e-12 75.5 111 48.6
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 2.9e-12 75.5 82 56.1
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 2.9e-12 75.5 84 56.0
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 3.8e-12 75.1 111 43.2
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 4.9e-12 74.7 86 45.3
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 4.9e-12 74.7 68 54.4
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 6.4e-12 74.3 114 46.5
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 1.1e-11 73.6 85 43.5
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 1.4e-11 73.2 82 56.1
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.9e-11 72.8 59 66.1
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 1.9e-11 72.8 75 57.3
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 1.9e-11 72.8 83 44.6
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.4e-11 72.4 112 47.3
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 3.2e-11 72.0 75 64.0
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.2e-10 70.1 74 58.1
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 1.6e-10 69.7 83 42.2
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 2.1e-10 69.3 81 54.3
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.1e-10 69.3 87 43.7
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 2.7e-10 68.9 59 50.8
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.7e-10 68.9 59 50.8
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.6e-10 68.2 83 56.6
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.6e-10 68.2 83 56.6
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.6e-10 68.2 83 56.6
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 7.8e-10 67.4 85 60.0
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 7.8e-10 67.4 114 41.2
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 7.8e-10 67.4 87 51.7
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 1.0e-09 67.0 63 47.6
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 1.7e-09 66.2 35 74.3
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 3.0e-09 65.5 83 49.4
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 3.0e-09 65.5 115 46.1
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 5.1e-09 64.7 35 74.3
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 1.5e-08 63.2 85 52.9
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.5e-08 63.2 83 53.0
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.5e-08 63.2 84 58.3
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 1.5e-08 63.2 39 64.1
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 1.5e-08 63.2 75 48.0
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 2.5e-08 62.4 35 74.3
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 5.6e-08 61.2 81 37.0
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 5.6e-08 61.2 84 56.0
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 5.6e-08 61.2 84 57.1
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 7.3e-08 60.8 36 66.7
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 7.3e-08 60.8 36 66.7
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 7.3e-08 60.8 85 55.3
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 7.3e-08 60.8 35 68.6
Actinidia17240 Actinidia chinensis HOM05D002914 ORTHO05D003196 1.3e-07 60.1 82 52.4
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.3e-07 60.1 36 63.9
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 1.6e-07 59.7 72 51.4
Migut.J01766 Erythranthe guttata HOM05D002914 ORTHO05D003196 2.8e-07 58.9 82 51.2
SEGI_40351 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 2.8e-07 58.9 78 55.1
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 3.6e-07 58.5 64 37.5
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 4.8e-07 58.2 85 54.1
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 4.8e-07 58.2 81 34.6
Peaxi162Scf00003g01911 Petunia axillaris HOM05D002914 ORTHO05D003196 5.3e-06 54.7 78 35.9
unitig_22.g6856 Utricularia gibba HOM05D002914 ORTHO05D003196 6.9e-06 54.3 71 54.9


User provided reference genes

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