Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 6.6e-61 237.3 126 100.0
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.0e-42 174.9 126 71.4
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 7.1e-39 164.1 126 68.3
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 5.1e-37 157.9 127 66.9
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.3e-36 154.8 125 64.8
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 7.3e-36 154.1 126 62.7
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 7.3e-36 154.1 127 64.6
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 2.8e-35 152.1 127 68.5
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.6e-35 151.8 127 66.9
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 8.1e-35 150.6 113 69.0
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 1.1e-34 150.2 122 64.8
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.8e-34 149.4 126 66.7
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.1e-34 148.7 129 64.3
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 5.2e-34 147.9 122 65.6
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 8.9e-34 147.1 126 64.3
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.6e-33 145.6 127 63.0
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 3.4e-33 145.2 126 61.9
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 3.4e-33 145.2 130 64.6
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 4.4e-33 144.8 126 63.5
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 5.8e-33 144.4 128 65.6
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 7.6e-33 144.1 130 64.6
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 7.6e-33 144.1 128 66.4
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 2.9e-32 142.1 126 62.7
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.9e-32 142.1 126 62.7
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.9e-32 142.1 126 62.7
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 6.4e-32 141.0 128 60.9
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 6.4e-32 141.0 128 60.9
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.1e-31 140.2 127 60.6
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.4e-31 139.8 128 59.4
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.4e-31 139.8 127 63.0
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 4.1e-31 138.3 128 63.3
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 5.4e-31 137.9 126 58.7
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 7.1e-31 137.5 99 70.7
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 7.1e-31 137.5 125 58.4
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.1e-31 137.5 125 58.4
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-30 136.7 125 58.4
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.2e-30 136.7 129 59.7
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 1.6e-30 136.3 127 60.6
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.6e-30 136.3 128 62.5
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.7e-30 135.6 124 59.7
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 3.5e-30 135.2 121 61.2
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.5e-30 135.2 126 61.9
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 3.5e-30 135.2 127 58.3
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 6.0e-30 134.4 126 57.9
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.0e-30 134.4 124 58.1
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.0e-30 134.4 125 58.4
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.0e-30 134.4 129 60.5
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 7.8e-30 134.0 127 59.8
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 7.8e-30 134.0 124 58.1
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.8e-30 134.0 124 58.1
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 7.8e-30 134.0 120 58.3
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.3e-29 133.3 124 58.1
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 2.3e-29 132.5 128 56.2
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 2.3e-29 132.5 120 57.5
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.0e-29 132.1 127 61.4
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.9e-29 131.7 124 58.9
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 5.1e-29 131.3 105 63.8
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 6.6e-29 131.0 127 58.3
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 6.6e-29 131.0 127 62.2
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 6.6e-29 131.0 128 60.2
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 6.6e-29 131.0 126 60.3
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 1.1e-28 130.2 126 55.6
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.1e-28 130.2 124 58.1
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.5e-28 129.8 112 64.3
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.5e-28 129.8 105 64.8
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.9e-28 129.4 103 65.0
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.9e-28 129.4 128 59.4
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.9e-28 129.4 128 59.4
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.9e-28 129.4 125 56.0
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 2.5e-28 129.0 124 59.7
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.3e-28 128.6 124 56.5
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.3e-28 128.6 124 56.5
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 3.3e-28 128.6 127 57.5
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 3.3e-28 128.6 124 56.5
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 5.6e-28 127.9 125 58.4
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 5.6e-28 127.9 122 59.8
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 7.3e-28 127.5 125 58.4
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 7.3e-28 127.5 127 57.5
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 7.3e-28 127.5 126 56.3
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 9.6e-28 127.1 124 55.6
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 9.6e-28 127.1 128 60.9
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-27 126.7 124 55.6
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 1.2e-27 126.7 125 57.6
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.8e-27 125.6 125 60.0
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.6e-27 125.2 124 54.8
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.6e-27 125.2 124 55.6
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.6e-27 125.2 128 59.4
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 6.2e-27 124.4 126 55.6
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 8.1e-27 124.0 127 59.8
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.1e-26 123.6 126 60.3
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 1.8e-26 122.9 128 57.8
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.8e-26 122.9 127 55.9
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 2.4e-26 122.5 125 57.6
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.4e-26 122.5 127 59.1
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 2.4e-26 122.5 127 59.1
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 3.1e-26 122.1 127 59.1
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 3.1e-26 122.1 127 59.1
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.1e-26 122.1 126 54.8
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 4.0e-26 121.7 104 66.3
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 4.0e-26 121.7 116 58.6
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 5.2e-26 121.3 128 60.2
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 5.2e-26 121.3 128 60.2
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 5.2e-26 121.3 128 60.2
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 5.2e-26 121.3 127 56.7
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.2e-25 120.2 100 64.0
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 1.2e-25 120.2 126 56.3
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.5e-25 119.8 128 59.4
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 128 59.4
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 1.5e-25 119.8 130 57.7
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 1.5e-25 119.8 127 58.3
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.0e-25 119.4 123 54.5
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.6e-25 119.0 127 55.1
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 3.4e-25 118.6 126 54.0
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 3.4e-25 118.6 127 55.1
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 3.4e-25 118.6 113 57.5
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 3.4e-25 118.6 123 53.7
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 3.4e-25 118.6 117 56.4
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 4.4e-25 118.2 128 57.8
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 4.4e-25 118.2 101 61.4
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 5.8e-25 117.9 120 54.2
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 5.8e-25 117.9 126 52.4
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.3e-24 116.7 124 53.2
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 1.7e-24 116.3 126 54.0
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 1.7e-24 116.3 125 56.8
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 3.8e-24 115.2 97 61.9
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 4.9e-24 114.8 118 54.2
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 6.4e-24 114.4 126 55.6
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 8.4e-24 114.0 124 56.5
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.1e-23 113.6 126 54.8
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.1e-23 113.6 126 54.8
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.4e-23 113.2 114 55.3
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 2.4e-23 112.5 95 65.3
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 9.3e-23 110.5 128 51.6
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 2.1e-22 109.4 110 58.2
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.1e-22 109.4 124 53.2
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 2.7e-22 109.0 123 53.7
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 4.6e-22 108.2 125 53.6
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 7.8e-22 107.5 125 52.8
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.3e-21 105.9 123 53.7
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 2.5e-20 102.4 123 49.6
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 5.6e-20 101.3 126 50.0
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 7.3e-20 100.9 127 48.8
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 3.6e-19 98.6 126 44.4
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 3.6e-19 98.6 124 46.8
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.8e-19 98.2 130 46.2
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 8.1e-19 97.4 123 50.4
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.8e-18 96.3 123 48.8
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 2.4e-18 95.9 124 46.8
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 2.4e-18 95.9 126 47.6
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 9.0e-18 94.0 130 49.2
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 4.4e-17 91.7 102 52.9
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 4.2e-15 85.1 132 41.7
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 7.1e-15 84.3 126 44.4
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 1.3e-13 80.1 73 60.3
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 3.0e-13 79.0 126 42.1
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 3.3e-12 75.5 125 42.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 9.6e-12 73.9 50 76.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 1.3e-11 73.6 55 70.9
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 2.1e-11 72.8 75 53.3
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 6.9e-10 67.8 124 40.3
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 3.4e-09 65.5 105 40.0
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 4.2e-07 58.5 73 43.8


User provided reference genes

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