Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G166500 Manihot esculenta HOM05D008210 ORTHO05D010078 5.7e-50 200.7 106 100.0
Potri.014G038500 Populus trichocarpa HOM05D008210 ORTHO05D010078 3.6e-20 101.7 104 54.8
Sabra14G0027900 Salix brachista HOM05D008210 ORTHO05D010078 6.2e-20 100.9 104 57.7
Potri.002G130500 Populus trichocarpa HOM05D008210 ORTHO05D010078 9.8e-18 93.6 104 55.8
Thecc.08G019400 Theobroma cacao HOM05D008210 ORTHO05D010078 3.5e-15 85.1 70 62.9
Rhsim06G0039800 Rhododendron simsii HOM05D008210 ORTHO05D010078 7.8e-15 84.0 107 47.7
Atru.chr13.581 Acer truncatum HOM05D008210 ORTHO05D010078 1.7e-14 82.8 65 61.5
Atru.chr13.582 Acer truncatum HOM05D008210 ORTHO05D010078 1.5e-13 79.7 65 58.5
Hma1.2p1_0023F.1_g015200 Hydrangea macrophylla HOM05D008210 ORTHO05D010078 1.9e-13 79.3 109 48.6
Haze_17600 Corylus avellana HOM05D008210 ORTHO05D010078 7.3e-13 77.4 107 47.7
Gorai.010G013900 Gossypium raimondii HOM05D008210 ORTHO05D010078 7.3e-13 77.4 99 44.4
Cfa018466 Carpinus fangiana HOM05D008210 ORTHO05D010078 1.2e-12 76.6 110 47.3
CiPaw.15G068700 Carya illinoinensis HOM05D008210 ORTHO05D010078 2.1e-12 75.9 109 45.9
Nitab4.5_0000110g0010 Nicotiana tabacum HOM05D008210 ORTHO05D010078 6.2e-12 74.3 82 50.0
TAR381G1599 Trochodendron aralioides HOM05D008210 ORTHO05D010078 8.1e-12 73.9 107 43.0
COL.COLO4_26398 Corchorus olitorius HOM05D008210 ORTHO05D010078 1.1e-11 73.6 74 54.1
Ciclev10002912m.g Citrus clementina HOM05D008210 ORTHO05D010078 1.4e-11 73.2 103 45.6
Aqoxy2G03320 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 2.3e-11 72.4 97 42.3
Aqoxy6G00952 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 2.3e-11 72.4 97 42.3
QL02p006968 Quercus lobata HOM05D008210 ORTHO05D010078 3.1e-11 72.0 109 48.6
Dinv36022 Davidia involucrata HOM05D000260 ORTHO05D002276 6.8e-11 70.9 91 50.5
Gohir.A06G013600 Gossypium hirsutum HOM05D008210 ORTHO05D010078 6.8e-11 70.9 99 41.4
Gohir.D06G011200 Gossypium hirsutum HOM05D008210 ORTHO05D010078 1.2e-10 70.1 101 42.6
GSVIVG01009614001 Vitis vinifera HOM05D008210 ORTHO05D010078 2.6e-10 68.9 104 47.1
Phvul.009G061375 Phaseolus vulgaris HOM05D008210 ORTHO05D010078 3.4e-10 68.6 105 42.9
FAN15G3542 Fragaria x ananassa HOM05D008210 ORTHO05D010078 4.4e-10 68.2 103 43.7
VMungo1309G3066 Vigna mungo HOM05D008210 ORTHO05D010078 4.4e-10 68.2 102 45.1
Cpa.g.sc64.23 Carica papaya HOM05D008210 ORTHO05D010078 5.8e-10 67.8 87 44.8
Psat0s3268g0120 Pisum sativum HOM05D008210 ORTHO05D010078 5.8e-10 67.8 115 46.1
Prupe.1G386500 Prunus persica HOM05D008210 ORTHO05D010078 1.7e-09 66.2 107 43.0
MELO3C010908.2 Cucumis melo HOM05D022138 ORTHO05D010078 2.9e-09 65.5 99 41.4
Glyma.04G035200 Glycine max HOM05D008210 ORTHO05D010078 3.8e-09 65.1 100 44.0
Lsat_1_v5_gn_1_19601 Lactuca sativa HOM05D008210 ORTHO05D010078 3.8e-09 65.1 81 44.4
RcHm_v2.0_Chr6g0300191 Rosa chinensis HOM05D008210 ORTHO05D010078 6.4e-09 64.3 103 39.8
FvH4_2g40530 Fragaria vesca HOM05D008210 ORTHO05D010078 8.4e-09 63.9 103 41.7
Nn5g29422 Nelumbo nucifera HOM05D008210 ORTHO05D010078 8.4e-09 63.9 100 41.0
SGA_v2.0_scaffold14G07009 Striga asiatica HOM05D008210 ORTHO05D010078 1.1e-08 63.5 92 42.4
TPR.G12346 Trifolium pratense HOM05D008210 ORTHO05D010078 1.4e-08 63.2 97 44.3
Lj1g0017592 Lotus japonicus HOM05D008210 ORTHO05D010078 1.9e-08 62.8 112 40.2
Glyma.06G035100 Glycine max HOM05D008210 ORTHO05D010078 2.4e-08 62.4 94 44.7
Medtr3g111460 Medicago truncatula HOM05D008210 ORTHO05D010078 2.4e-08 62.4 106 41.5
ClCG08G015480 Citrullus lanatus HOM05D022138 ORTHO05D010078 3.2e-08 62.0 69 50.7
CsaV3_2G028310 Cucumis sativus L. HOM05D022138 ORTHO05D010078 1.2e-07 60.1 73 50.7
TAR628G0004 Trochodendron aralioides HOM05D008210 ORTHO05D010078 1.2e-07 60.1 91 40.7
Ah.09g236870 Amaranthus hybridus HOM05D008210 ORTHO05D010078 1.6e-07 59.7 87 41.4
Ah.09g236890 Amaranthus hybridus HOM05D008210 ORTHO05D010078 1.6e-07 59.7 87 41.4
arahy.Tifrunner.gnm1.ann1.KBQ6U1 Arachis hypogaea HOM05D008210 ORTHO05D010078 1.6e-07 59.7 98 45.9
Aqoxy6G00950 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 2.1e-07 59.3 78 43.6
Eucgr.F01503 Eucalyptus grandis HOM05D008210 ORTHO05D010078 2.1e-07 59.3 90 40.0
Cc10_g03600 Coffea canephora HOM05D008210 ORTHO05D010078 4.6e-07 58.2 104 42.3
MSTRG.22279 Avicennia marina HOM05D008210 ORTHO05D010078 1.0e-06 57.0 99 38.4
EL10Ac8g19959 Beta vulgaris HOM05D008210 ORTHO05D010078 1.3e-06 56.6 71 45.1
Lalb_Chr05g0226961 Lupinus albus HOM05D008334 ORTHO05D010366 1.3e-06 56.6 105 34.3
Ca_15536_v3 Cicer arietinum L. HOM05D008210 ORTHO05D010078 2.3e-06 55.8 80 42.5
ECA247G0280 Erigeron canadensis HOM05D008210 ORTHO05D010078 2.3e-06 55.8 111 33.3
AL1G53960 Arabidopsis lyrata HOM05D015684 ORTHO05D010078 3.0e-06 55.5 91 34.1
CiPaw.01G028200 Carya illinoinensis HOM05D008334 ORTHO05D010366 6.6e-06 54.3 105 36.2
Potri.007G034700 Populus trichocarpa HOM05D008334 ORTHO05D010366 6.6e-06 54.3 109 36.7


User provided reference genes

Program Settings