Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1701.8 862 100.0
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1513.4 841 89.9
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1499.6 863 87.0
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1476.1 859 86.5
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1469.1 866 85.8
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1465.3 865 85.5
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1463.7 863 85.5
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1458.7 905 82.4
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1449.9 864 84.3
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1443.7 866 85.2
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1442.9 841 85.1
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1439.1 859 84.4
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1437.2 866 83.5
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1436.8 856 84.6
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1434.5 866 84.1
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1434.5 866 83.9
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1433.7 866 83.9
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1432.5 855 83.9
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1426.8 864 83.3
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1426.8 859 83.0
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1423.3 864 83.2
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1421.8 827 85.9
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1419.4 862 83.1
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1419.4 862 82.5
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1419.1 862 82.5
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1415.2 862 83.3
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1414.4 865 82.5
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1414.4 859 82.7
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1413.3 865 82.5
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1412.1 854 84.8
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1411.7 866 81.9
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1411.0 859 83.2
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1410.6 865 82.4
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1407.9 854 83.4
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1407.5 865 82.2
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1406.3 876 81.2
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1402.1 854 83.1
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1398.3 845 83.9
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1396.7 896 79.8
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1395.9 864 81.2
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1393.3 866 82.1
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1391.7 855 82.6
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1391.3 837 83.3
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1389.4 859 82.8
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1388.2 863 81.5
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1385.9 860 82.3
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1380.5 863 80.8
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1380.5 864 81.6
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1380.2 841 84.1
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1379.8 841 83.0
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1377.5 851 82.0
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1374.0 864 80.6
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 850 81.6
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 852 81.6
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1365.5 890 74.3
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1363.2 847 82.2
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1362.4 853 81.4
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1356.7 858 80.3
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1355.5 835 82.5
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1354.7 837 81.6
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1354.7 821 82.6
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1352.4 835 82.0
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1350.9 865 80.5
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1350.9 857 80.0
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1348.2 835 81.9
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1347.8 836 82.4
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1345.1 842 80.6
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1343.6 831 81.3
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1339.3 841 81.5
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1338.9 809 83.3
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1338.6 861 78.2
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 835 82.2
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 849 79.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1335.1 853 80.1
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1334.7 851 79.9
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1333.5 834 79.3
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 852 80.5
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 852 80.5
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 852 80.5
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1332.0 852 80.5
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1331.6 848 80.7
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1328.2 852 79.2
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1325.5 885 75.9
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 845 80.1
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 896 74.4
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1321.6 815 80.9
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1320.1 815 82.0
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1319.7 843 80.7
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1318.1 815 81.7
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 815 81.8
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1314.7 844 78.7
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1314.3 843 80.3
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 890 76.6
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1313.1 844 81.4
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 863 77.4
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 841 80.4
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 835 80.8
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 835 80.8
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 842 79.6
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 842 80.0
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 851 79.2
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 839 78.1
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 848 79.4
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1300.0 815 80.6
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 848 79.2
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1293.9 817 81.3
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 830 80.2
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1289.2 782 84.7
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 876 76.0
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1287.3 836 78.0
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1285.8 818 79.1
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1279.6 829 78.0
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1276.2 824 77.9
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1273.5 817 78.3
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1270.8 778 83.3
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 840 77.0
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 863 75.9
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1260.7 826 75.7
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 816 79.7
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1258.8 810 78.3
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 815 79.3
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1251.9 839 72.2
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1245.0 823 79.5
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1240.7 819 76.8
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1240.3 822 76.9
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1236.9 717 85.5
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1231.1 828 78.1
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1228.4 881 73.9
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1228.0 824 76.0
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1221.1 842 77.1
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1210.7 844 74.9
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1205.3 842 74.8
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1203.3 787 77.4
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1198.3 754 79.6
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1182.5 910 69.0
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1166.8 810 72.1
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1164.1 777 74.4
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1160.2 812 72.9
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1144.8 736 81.7
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1137.9 817 71.1
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1132.9 818 70.8
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 7.9e-307 1057.0 833 68.8
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 2.7e-291 1005.4 598 81.4
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 6.1e-275 951.0 613 72.6
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.7e-273 943.7 848 62.7
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 1.6e-270 936.4 599 76.6
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 5.9e-270 934.5 555 86.1
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 1.3e-269 933.3 533 84.2
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 9.3e-183 644.8 708 54.2
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 9.4e-151 538.5 458 59.8
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.0e-149 533.5 361 83.1
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 6.5e-144 515.8 329 76.6
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 4.9e-115 419.9 318 76.1
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.3e-99 368.6 397 54.7
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 5.4e-98 363.2 264 68.6
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 8.1e-86 322.8 581 44.8
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 4.2e-66 257.3 152 78.9
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 7.7e-60 236.5 156 77.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 2.6e-44 184.9 163 57.1
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 4.5e-36 157.5 474 30.0
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 2.6e-31 141.7 76 88.2
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.2e-30 138.7 459 28.1
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.8e-30 138.3 127 52.0
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.1e-29 136.3 458 27.1
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 3.8e-27 127.9 68 89.7
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 8.5e-27 126.7 437 27.9
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 7.2e-26 123.6 99 65.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 6.1e-25 120.6 74 75.7
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 4.0e-24 117.9 410 28.8
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-17 95.9 266 28.6
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 6.8e-16 90.5 220 32.3
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 6.8e-16 90.5 159 37.1
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.4e-13 82.8 83 49.4
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 8.9e-08 63.5 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.6e-07 62.0 38 78.9


User provided reference genes

Program Settings