Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 5.6e-170 600.9 310 100.0
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 2.0e-167 592.4 310 98.7
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.3e-158 563.1 304 96.4
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 4.4e-135 485.0 302 82.5
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.1e-124 449.5 304 76.6
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 3.0e-123 445.7 304 76.3
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.6e-121 439.9 304 74.7
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 3.1e-120 435.6 305 74.1
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 4.0e-120 435.3 304 74.0
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 1.2e-119 433.7 305 73.8
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 4.2e-117 425.2 305 70.5
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 5.5e-117 424.9 305 71.1
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.2e-116 423.7 305 70.5
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 4.6e-116 421.8 306 73.2
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 8.7e-115 417.5 305 73.1
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 1.5e-114 416.8 304 72.7
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 4.3e-114 415.2 304 73.4
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 5.6e-114 414.8 306 70.6
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 1.6e-113 413.3 305 70.8
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 2.8e-113 412.5 304 71.1
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 4.8e-113 411.8 306 73.2
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 3.1e-112 409.1 305 70.2
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 6.9e-112 407.9 309 70.6
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 4.5e-111 405.2 306 69.6
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 7.6e-111 404.4 307 70.0
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 7.6e-111 404.4 305 70.5
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 1.7e-110 403.3 306 69.6
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 4.9e-110 401.7 305 69.5
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 6.5e-110 401.4 306 69.6
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 1.1e-109 400.6 307 69.4
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 7.9e-108 394.4 304 69.1
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.0e-107 394.0 307 68.7
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 1.0e-107 394.0 305 68.9
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 1.3e-107 393.7 304 68.1
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.3e-107 393.7 304 67.1
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 1.8e-107 393.3 306 68.6
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 1.8e-107 393.3 304 70.1
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 3.9e-107 392.1 305 70.2
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 1.9e-106 389.8 306 68.0
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 4.3e-106 388.7 306 68.6
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 1.6e-105 386.7 306 67.6
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 1.6e-105 386.7 309 68.0
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 2.8e-105 386.0 304 66.1
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 3.7e-105 385.6 307 67.1
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 4.8e-105 385.2 309 67.0
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 2.4e-104 382.9 305 66.6
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 2.4e-104 382.9 302 67.2
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 9.0e-104 380.9 305 65.9
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 1.5e-103 380.2 306 68.0
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.5e-103 380.2 306 68.0
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 1.5e-103 380.2 305 66.2
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.5e-103 380.2 306 65.7
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 2.0e-103 379.8 304 66.1
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 2.0e-103 379.8 304 66.1
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 5.9e-103 378.3 304 65.8
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 1.0e-102 377.5 306 65.0
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.3e-102 377.1 309 64.7
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 1.3e-102 377.1 305 66.2
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 3.8e-102 375.6 304 64.5
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 5.0e-102 375.2 309 64.4
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 6.5e-102 374.8 304 64.1
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 8.5e-102 374.4 304 65.5
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 1.1e-101 374.0 304 65.1
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 1.9e-101 373.2 305 67.2
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 1.9e-101 373.2 304 65.1
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 3.2e-101 372.5 308 64.0
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 1.6e-100 370.2 310 63.9
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 2.1e-100 369.8 309 64.1
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 2.7e-100 369.4 310 63.9
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 2.7e-100 369.4 307 64.8
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 4.6e-100 368.6 318 65.1
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 6.1e-100 368.2 306 64.1
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 7.9e-100 367.9 304 64.5
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 1.3e-99 367.1 333 61.9
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.3e-99 367.1 306 67.3
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 1.8e-99 366.7 302 62.9
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 1.8e-99 366.7 309 62.8
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.3e-99 366.3 306 67.0
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 3.0e-99 365.9 307 65.8
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 5.1e-99 365.2 308 64.0
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 6.7e-99 364.8 305 65.9
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 6.7e-99 364.8 306 67.0
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 8.7e-99 364.4 307 64.5
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 1.1e-98 364.0 311 63.7
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 1.1e-98 364.0 337 60.8
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 4.3e-98 362.1 306 63.4
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.7e-97 360.1 304 61.8
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 9.1e-96 354.4 363 55.9
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.2e-95 354.0 309 63.4
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.2e-95 354.0 306 61.8
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 1.3e-94 350.5 366 54.6
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 2.9e-94 349.4 305 63.9
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.4e-93 347.1 304 63.5
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 1.9e-93 346.7 303 60.7
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 3.2e-93 345.9 318 60.1
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 1.6e-92 343.6 302 60.6
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 2.7e-92 342.8 305 63.3
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 3.6e-92 342.4 316 59.5
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 4.7e-92 342.0 314 58.9
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 8.8e-91 337.8 267 68.2
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 2.2e-89 333.2 303 60.4
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 8.2e-89 331.3 307 58.0
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.4e-85 320.5 322 57.1
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 3.2e-85 319.3 304 57.6
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 1.0e-83 314.3 312 53.2
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 1.7e-78 297.0 350 50.6
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 6.7e-75 285.0 309 55.7
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 5.7e-74 282.0 370 45.1
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 4.0e-67 259.2 306 49.7
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 2.7e-55 219.9 153 74.5
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 2.9e-54 216.5 326 41.4
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 3.8e-54 216.1 189 60.3
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 5.0e-46 189.1 307 39.1
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 5.0e-46 189.1 136 71.3
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 1.8e-43 180.6 180 57.2
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 9.8e-42 174.9 322 36.3
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 2.0e-34 150.6 322 32.3
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 1.3e-33 147.9 102 72.5
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 4.6e-31 139.4 105 65.7
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.1e-30 136.0 105 62.9
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.2e-20 104.8 124 46.0
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 4.0e-19 99.8 124 44.4
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 6.0e-15 85.9 106 50.0
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.8e-12 77.0 316 25.6
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 2.1e-07 60.8 161 26.7
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 2.7e-07 60.5 41 68.3
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 6.0e-07 59.3 51 58.8
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 6.0e-07 59.3 32 84.4
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 7.9e-07 58.9 211 25.1
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 8.7e-06 55.5 88 45.5


User provided reference genes

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