Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 3.0e-191 671.8 357 100.0
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 7.4e-126 454.5 357 71.4
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.6e-94 349.7 345 56.2
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.3e-90 337.4 355 55.5
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 5.0e-90 335.5 345 54.2
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 2.9e-82 309.7 356 53.1
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 9.2e-76 288.1 346 48.3
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 1.9e-73 280.4 353 44.2
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.5e-73 280.0 365 44.4
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 7.5e-70 268.5 347 45.5
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 9.8e-70 268.1 343 48.7
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.0e-67 260.4 302 48.0
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.7e-67 260.0 356 42.1
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 7.8e-67 258.5 356 41.9
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 5.0e-66 255.8 364 42.3
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 4.3e-65 252.7 355 45.9
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 4.3e-65 252.7 355 46.8
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 6.2e-64 248.8 376 43.1
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 1.2e-62 244.6 309 45.0
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.5e-62 244.2 361 41.3
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.6e-62 243.4 361 41.0
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 2.2e-61 240.4 352 40.9
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 4.9e-61 239.2 363 44.6
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 7.8e-59 231.9 358 43.3
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 2.3e-58 230.3 309 47.9
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 3.0e-58 229.9 341 41.9
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 3.3e-57 226.5 359 40.4
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 4.3e-57 226.1 342 42.1
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 5.6e-57 225.7 359 42.6
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.6e-56 224.2 357 40.1
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 1.6e-56 224.2 370 39.2
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 2.8e-56 223.4 360 40.0
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 6.2e-56 222.2 369 39.6
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.1e-55 221.5 354 41.5
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 1.4e-52 211.1 364 39.3
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.9e-52 210.7 355 40.6
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 2.4e-52 210.3 345 38.3
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 3.2e-52 209.9 343 39.7
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 1.2e-51 208.0 361 38.5
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.5e-51 206.5 322 40.7
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 1.7e-50 204.1 343 41.1
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 3.0e-50 203.4 356 38.8
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 3.9e-50 203.0 328 37.5
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 6.6e-50 202.2 358 38.0
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 8.6e-50 201.8 357 38.1
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 8.6e-50 201.8 362 38.1
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 8.6e-50 201.8 357 37.8
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.1e-49 201.4 355 40.0
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 1.5e-49 201.1 217 53.5
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 1.9e-49 200.7 354 39.3
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.9e-49 200.7 343 39.4
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 1.9e-49 200.7 357 37.8
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 3.3e-49 199.9 400 35.0
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 3.3e-49 199.9 378 38.6
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 4.3e-49 199.5 316 41.8
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 9.6e-49 198.4 359 37.6
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 9.6e-49 198.4 357 37.5
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 1.6e-48 197.6 342 38.9
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 2.8e-48 196.8 343 37.3
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 3.6e-48 196.4 347 39.2
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 6.2e-48 195.7 355 38.6
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 8.1e-48 195.3 362 36.7
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.1e-47 194.9 385 37.4
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 3.1e-47 193.4 372 37.4
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.5e-46 191.0 344 38.1
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 1.5e-46 191.0 356 36.5
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 2.0e-46 190.7 343 38.8
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 2.6e-46 190.3 346 37.9
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 2.9e-45 186.8 345 36.2
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 2.9e-45 186.8 372 36.8
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 1.9e-44 184.1 341 36.4
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 4.2e-44 183.0 348 36.8
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 7.1e-44 182.2 356 36.2
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 7.1e-44 182.2 372 37.1
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 1.2e-43 181.4 367 35.4
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 4.6e-43 179.5 345 35.7
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.3e-42 177.9 343 36.7
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 1.3e-42 177.9 354 36.2
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 1.7e-42 177.6 342 36.0
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 1.1e-41 174.9 361 35.2
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 1.1e-41 174.9 307 38.4
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 1.5e-41 174.5 354 35.3
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 4.3e-41 172.9 342 37.1
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 4.3e-41 172.9 324 39.2
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 5.6e-41 172.6 344 35.5
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 1.3e-40 171.4 345 36.8
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 2.8e-40 170.2 354 36.7
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 4.8e-40 169.5 342 35.7
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 8.1e-40 168.7 333 34.2
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.5e-38 164.5 342 34.5
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 4.5e-38 162.9 369 33.3
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 5.8e-38 162.5 367 32.4
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 7.1e-36 155.6 296 36.8
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 2.7e-35 153.7 257 38.9
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 4.6e-35 152.9 293 36.9
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.3e-34 151.4 295 35.9
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.8e-34 151.0 342 34.8
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 6.7e-34 149.1 342 34.5
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.5e-33 147.9 342 34.5
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 1.9e-33 147.5 293 33.4
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 3.3e-33 146.7 336 32.1
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 7.4e-33 145.6 335 33.4
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 2.1e-32 144.1 183 45.4
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 6.2e-32 142.5 218 37.6
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 4.0e-31 139.8 345 32.2
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 9.9e-30 135.2 347 30.3
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 3.8e-29 133.3 316 32.3
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 3.2e-28 130.2 349 28.9
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 5.5e-28 129.4 368 29.9
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 9.3e-28 128.6 327 30.6
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 7.9e-27 125.6 345 30.1
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.0e-26 125.2 292 35.3
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 3.0e-26 123.6 287 32.1
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 8.7e-26 122.1 217 32.7
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 1.9e-25 120.9 319 32.0
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 2.5e-25 120.6 367 30.5
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 2.1e-24 117.5 381 27.6
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 6.2e-24 115.9 239 31.0
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 3.1e-23 113.6 273 32.6
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 6.9e-23 112.5 224 35.7
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 2.6e-22 110.5 256 33.6
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 7.6e-22 109.0 166 40.4
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 2.9e-21 107.1 362 30.9
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 1.1e-20 105.1 350 31.1
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.8e-18 97.8 377 28.1
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 5.1e-18 96.3 369 28.7
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 6.7e-18 95.9 270 30.4
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 5.3e-15 86.3 200 29.5
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 5.3e-15 86.3 355 25.9
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 2.6e-14 84.0 216 25.0
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 3.4e-14 83.6 121 38.8
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 3.4e-14 83.6 371 26.1
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 7.6e-14 82.4 275 24.0
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 2.1e-11 74.3 252 28.6
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 6.1e-11 72.8 177 32.8
Aqoxy2G01737 Aquilegia oxysepala HOM05D017957 ORTHO05D005897 1.3e-10 71.6 221 26.2
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 6.7e-10 69.3 213 27.2
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 1.1e-09 68.6 94 38.3
MBI09_g43704_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 2.2e-08 64.3 144 37.5
Aqoxy7G02104 Aquilegia oxysepala HOM05D003461 ORTHO05D005897 1.1e-07 62.0 273 24.5
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 1.2e-06 58.5 158 32.3
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 2.0e-06 57.8 56 51.8
Dinv39518 Davidia involucrata HOM05D005472 ORTHO05D005897 3.4e-06 57.0 122 33.6
Sabra05G0018600 Salix brachista HOM05D028329 ORTHO05D005897 7.7e-06 55.8 61 49.2
Sabra12G0048900 Salix brachista HOM05D028329 ORTHO05D005897 7.7e-06 55.8 61 49.2
Sabra16G0239000 Salix brachista HOM05D028329 ORTHO05D005897 7.7e-06 55.8 61 49.2


User provided reference genes

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