Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G142600 Manihot esculenta HOM05D007648 ORTHO05D009613 7.3e-37 156.8 82 100.0
QL02p012929 Quercus lobata HOM05D007648 ORTHO05D009613 6.0e-31 137.1 81 86.4
Dinv31891 Davidia involucrata HOM05D007648 ORTHO05D009613 1.7e-30 135.6 81 85.2
CiPaw.07G143700 Carya illinoinensis HOM05D007648 ORTHO05D009613 3.9e-30 134.4 82 85.4
GSVIVG01008741001 Vitis vinifera HOM05D007648 ORTHO05D009613 2.5e-29 131.7 82 82.9
CSS0030217 Camellia sinensis var. sinensis HOM05D007648 ORTHO05D009613 3.3e-29 131.3 82 84.1
Thecc.08G051700 Theobroma cacao HOM05D007648 ORTHO05D009613 5.6e-29 130.6 81 82.7
Sc02g0008880 Simmondsia chinensis HOM05D007648 ORTHO05D009613 9.6e-29 129.8 82 81.7
TAR625G0376 Trochodendron aralioides HOM05D007648 ORTHO05D009613 9.6e-29 129.8 82 82.9
Ciclev10003012m.g Citrus clementina HOM05D007648 ORTHO05D009613 1.3e-28 129.4 82 80.5
Haze_22702 Corylus avellana HOM05D007648 ORTHO05D009613 1.3e-28 129.4 80 83.8
COL.COLO4_26084 Corchorus olitorius HOM05D007648 ORTHO05D009613 1.6e-28 129.0 81 81.5
Sabra14G0141300 Salix brachista HOM05D000525 ORTHO05D001368 1.6e-28 129.0 81 82.7
Atru.chr13.217 Acer truncatum HOM05D007648 ORTHO05D009613 2.8e-28 128.3 80 85.0
Potri.014G181400 Populus trichocarpa HOM05D007648 ORTHO05D009613 4.8e-28 127.5 81 82.7
Sc02g0008840 Simmondsia chinensis HOM05D007648 ORTHO05D009613 4.8e-28 127.5 82 80.5
Lsat_1_v5_gn_5_1580 Lactuca sativa HOM05D007648 ORTHO05D009613 8.1e-28 126.7 82 78.0
Duzib093G2040 Durio zibethinus HOM05D007648 ORTHO05D009613 1.1e-27 126.3 82 80.5
Actinidia29767 Actinidia chinensis HOM05D007648 ORTHO05D009613 1.4e-27 125.9 81 81.5
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.4e-27 125.9 80 78.8
THA.LOC104811443 Tarenaya hassleriana HOM05D007648 ORTHO05D009613 1.8e-27 125.6 82 78.0
Ah.00g000660 Amaranthus hybridus HOM05D007648 ORTHO05D009613 4.0e-27 124.4 80 77.5
CARHR069590 Cardamine hirsuta HOM05D007648 ORTHO05D009613 5.3e-27 124.0 82 78.0
ClCG05G015420 Citrullus lanatus HOM05D007648 ORTHO05D009613 5.3e-27 124.0 81 75.3
Carub.0002s2295 Capsella rubella HOM05D007648 ORTHO05D009613 6.9e-27 123.6 82 76.8
HanXRQChr06g0185111 Helianthus annuus HOM05D007648 ORTHO05D009613 6.9e-27 123.6 82 78.0
Rhsim07G0248300 Rhododendron simsii HOM05D007648 ORTHO05D009613 1.2e-26 122.9 82 75.6
TWI12G0541 Tripterygium wilfordii HOM05D007648 ORTHO05D009613 1.2e-26 122.9 81 76.5
Thhalv10019391m.g Eutrema salsugineum HOM05D007648 ORTHO05D009613 1.5e-26 122.5 82 79.3
Sed0006121 Sechium edule HOM05D007648 ORTHO05D009613 1.5e-26 122.5 82 75.6
AT1G76065 Arabidopsis thaliana HOM05D007648 ORTHO05D009613 2.6e-26 121.7 80 77.5
AL2G36100 Arabidopsis lyrata HOM05D007648 ORTHO05D009613 5.8e-26 120.6 80 76.2
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 5.8e-26 120.6 80 77.5
Eucgr.F03708 Eucalyptus grandis HOM05D007648 ORTHO05D009613 7.6e-26 120.2 82 75.6
arahy.Tifrunner.gnm1.ann1.8I3IQY Arachis hypogaea HOM05D007648 ORTHO05D009613 1.3e-25 119.4 80 77.5
Lj5g0008894 Lotus japonicus HOM05D007648 ORTHO05D009613 2.9e-25 118.2 77 77.9
vmacro17151 Vaccinium macrocarpon HOM05D007648 ORTHO05D009613 2.9e-25 118.2 82 74.4
Prupe.1G359500 Prunus persica HOM05D007648 ORTHO05D009613 3.8e-25 117.9 81 74.1
Rhsim07G0248100 Rhododendron simsii HOM05D007648 ORTHO05D009613 3.8e-25 117.9 77 77.9
arahy.Tifrunner.gnm1.ann1.EILY3I Arachis hypogaea HOM05D007648 ORTHO05D009613 4.9e-25 117.5 77 79.2
PSO210G3155 Papaver somniferum HOM05D007648 ORTHO05D009613 4.9e-25 117.5 75 80.0
Aa31LG4G6180 Aethionema arabicum HOM05D007648 ORTHO05D009613 8.4e-25 116.7 80 76.2
FvH4_2g37960 Fragaria vesca HOM05D007648 ORTHO05D009613 8.4e-25 116.7 81 72.8
RcHm_v2.0_Chr6g0303661 Rosa chinensis HOM05D007648 ORTHO05D009613 8.4e-25 116.7 81 74.1
Aqoxy5G01099 Aquilegia oxysepala HOM05D007648 ORTHO05D009613 1.1e-24 116.3 82 73.2
A08p09340 Brassica napus HOM05D007648 ORTHO05D009613 1.1e-24 116.3 82 75.6
BolC8t48002H Brassica oleracea HOM05D007648 ORTHO05D009613 1.1e-24 116.3 82 75.6
FAN20G1741 Fragaria x ananassa HOM05D007648 ORTHO05D009613 1.1e-24 116.3 81 72.8
CsaV3_3G046120 Cucumis sativus L. HOM05D007648 ORTHO05D009613 1.9e-24 115.5 82 70.7
Medtr1g026100 Medicago truncatula HOM05D007648 ORTHO05D009613 1.9e-24 115.5 77 77.9
Glyma.17G261200 Glycine max HOM05D007648 ORTHO05D009613 2.4e-24 115.2 76 76.3
BcaB07g30075 Brassica carinata HOM05D007648 ORTHO05D009613 3.2e-24 114.8 82 75.6
BcaC07g37632 Brassica carinata HOM05D007648 ORTHO05D009613 3.2e-24 114.8 82 74.4
Psat6g001120 Pisum sativum HOM05D007648 ORTHO05D009613 3.2e-24 114.8 77 77.9
BraA08t32933Z Brassica rapa HOM05D007648 ORTHO05D009613 4.2e-24 114.4 82 74.4
Phvul.001G002600 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 4.2e-24 114.4 79 77.2
FAN15G0474 Fragaria x ananassa HOM05D007648 ORTHO05D009613 5.4e-24 114.0 81 71.6
Ca_13484_v3 Cicer arietinum L. HOM05D007648 ORTHO05D009613 7.1e-24 113.6 77 76.6
Lalb_Chr19g0131601 Lupinus albus HOM05D007648 ORTHO05D009613 7.1e-24 113.6 77 75.3
MELO3C003728.2 Cucumis melo HOM05D007648 ORTHO05D009613 9.3e-24 113.2 82 69.5
Gohir.D01G035600 Gossypium hirsutum HOM05D007648 ORTHO05D009613 1.6e-23 112.5 76 75.0
CAN.G22.4 Capsicum annuum HOM05D007648 ORTHO05D009613 2.1e-23 112.1 80 68.8
Gorai.002G043700 Gossypium raimondii HOM05D007648 ORTHO05D009613 2.1e-23 112.1 76 75.0
PGSC0003DMG400023820 Solanum tuberosum HOM05D007648 ORTHO05D009613 2.1e-23 112.1 82 72.0
Phvul.001G002300 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 2.7e-23 111.7 77 76.6
VMungo0647G0751 Vigna mungo HOM05D007648 ORTHO05D009613 2.7e-23 111.7 74 78.4
Gohir.A01G044700 Gossypium hirsutum HOM05D007648 ORTHO05D009613 3.5e-23 111.3 76 73.7
MD08G1007600 Malus domestica HOM05D007648 ORTHO05D009613 3.5e-23 111.3 82 70.7
Os02g0667000 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 3.5e-23 111.3 81 71.6
Cc10_g01140 Coffea canephora HOM05D007648 ORTHO05D009613 4.6e-23 110.9 80 70.0
MD15G1006800 Malus domestica HOM05D007648 ORTHO05D009613 4.6e-23 110.9 82 69.5
Sopen06g017690 Solanum pennellii HOM05D007648 ORTHO05D009613 4.6e-23 110.9 82 70.7
ECA238G3742 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.0e-23 110.5 73 78.1
DCAR_021446 Daucus carota HOM05D007648 ORTHO05D009613 1.3e-22 109.4 82 70.7
CDE04G2628 Ceratophyllum demersum HOM05D007648 ORTHO05D009613 3.0e-22 108.2 80 72.5
BraA02t08664Z Brassica rapa HOM05D007648 ORTHO05D009613 5.1e-22 107.5 75 76.0
HPP92_003481 Vanilla planifolia HOM05D007648 ORTHO05D009613 6.7e-22 107.1 81 69.1
HPP92_026879 Vanilla planifolia HOM05D007648 ORTHO05D009613 1.1e-21 106.3 81 70.4
CAN.G22.7 Capsicum annuum HOM05D007648 ORTHO05D009613 3.3e-21 104.8 80 65.0
SalBow7G1731 Salvia bowleyana HOM05D007648 ORTHO05D009613 3.3e-21 104.8 82 65.9
Migut.C00899 Erythranthe guttata HOM05D007648 ORTHO05D009613 1.6e-20 102.4 79 65.8
MBI05_g46751_MAGBIO Magnolia biondii HOM05D007648 ORTHO05D009613 2.8e-20 101.7 73 72.6
BolC2t11627H Brassica oleracea HOM05D007648 ORTHO05D009613 2.0e-18 95.5 82 65.9
Nitab4.5_0004193g0030 Nicotiana tabacum HOM05D000998 ORTHO05D000806 2.2e-17 92.0 64 71.9
Peaxi162Scf00394g00212 Petunia axillaris HOM05D007648 ORTHO05D009613 6.5e-17 90.5 69 72.5
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.1e-16 89.7 134 43.3
Nitab4.5_0000716g0050 Nicotiana tabacum HOM05D000998 ORTHO05D000806 2.7e-15 85.1 59 71.2
A02p36690 Brassica napus HOM05D007648 ORTHO05D009613 3.5e-15 84.7 60 73.3
C02p55750 Brassica napus HOM05D007648 ORTHO05D009613 1.0e-14 83.2 70 64.3
Mapoly0088s0028 Marchantia polymorpha HOM05D007648 ORTHO05D009613 3.0e-14 81.6 80 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3278 Anthoceros agrestis HOM05D007648 ORTHO05D009613 5.1e-14 80.9 76 57.9
Pp3c8_20950 Physcomitrium patens HOM05D007648 ORTHO05D009613 1.3e-12 76.3 76 52.6
AUR62013884 Chenopodium quinoa HOM05D007648 ORTHO05D009613 5.3e-11 70.9 45 75.6
Os03g0159800 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 2.0e-10 68.9 45 71.1
unitig_748.g7721 Utricularia gibba HOM05D007648 ORTHO05D009613 4.5e-10 67.8 46 69.6
SalBow1G6040 Salvia bowleyana HOM05D038733 ORTHO05D009613 1.1e-08 63.2 46 67.4
SalBow7G3523 Salvia bowleyana HOM05D038733 ORTHO05D009613 1.1e-08 63.2 46 67.4
Actinidia37950 Actinidia chinensis HOM05D007648 ORTHO05D009613 3.2e-08 61.6 38 76.3
BcaC03g17585 Brassica carinata HOM05D007648 ORTHO05D009613 1.3e-06 56.2 80 47.5


User provided reference genes

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