Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 0.0e+00 1339.3 675 100.0
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 0.0e+00 1108.6 672 81.5
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 0.0e+00 1107.0 676 82.0
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 0.0e+00 1089.3 674 80.3
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 0.0e+00 1080.1 676 80.8
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 0.0e+00 1077.0 676 79.6
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.8e-311 1072.0 676 79.3
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 2.3e-311 1071.6 676 79.3
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 1.7e-309 1065.4 667 79.9
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 1.9e-308 1062.0 675 78.2
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 9.5e-308 1059.7 675 78.2
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 1.1e-306 1056.2 658 80.1
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 5.2e-306 1053.9 678 78.5
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 2.4e-303 1045.0 691 77.1
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 2.4e-303 1045.0 675 78.1
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.2e-302 1042.7 675 77.9
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.9e-300 1035.4 677 76.8
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.3e-300 1034.2 677 78.0
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 7.3e-300 1033.5 689 76.1
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 9.5e-300 1033.1 676 75.4
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 1.6e-299 1032.3 650 79.1
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.8e-299 1031.6 684 76.8
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.2e-297 1026.2 648 77.8
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 1.5e-297 1025.8 676 77.2
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 3.5e-294 1014.6 692 75.6
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 4.6e-294 1014.2 616 81.7
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 6.0e-294 1013.8 668 76.8
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 4.3e-292 1007.7 668 76.3
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 6.2e-291 1003.8 668 76.6
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 7.6e-289 996.9 604 82.5
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 7.6e-289 996.9 669 75.6
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 1.3e-288 996.1 678 73.3
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 4.9e-288 994.2 653 77.2
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 4.9e-288 994.2 678 75.2
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 6.4e-288 993.8 677 73.6
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 7.1e-287 990.3 657 74.3
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 2.7e-286 988.4 675 74.7
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 4.6e-286 987.6 661 75.0
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.5e-284 982.6 676 73.1
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 1.9e-284 982.2 678 73.6
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 3.3e-284 981.5 606 81.2
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 4.3e-284 981.1 652 75.0
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 7.3e-284 980.3 660 75.0
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 1.6e-283 979.2 676 73.2
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 6.9e-282 973.8 676 73.1
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 2.0e-281 972.2 651 74.8
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 2.0e-281 972.2 659 74.1
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 7.6e-281 970.3 651 74.8
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 7.6e-281 970.3 677 72.8
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 1.3e-280 969.5 677 73.0
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.3e-280 969.5 661 74.3
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 2.9e-280 968.4 652 74.5
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 6.4e-280 967.2 653 74.1
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 8.4e-280 966.8 652 74.2
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 1.4e-279 966.1 659 72.8
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 1.4e-279 966.1 658 73.4
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 1.4e-279 966.1 652 74.2
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.4e-279 966.1 652 73.0
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 1.2e-278 963.0 654 73.1
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 1.3e-277 959.5 675 72.0
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 8.7e-277 956.8 649 73.5
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 1.1e-276 956.4 649 72.1
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 1.5e-276 956.1 603 79.9
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 3.3e-276 954.9 676 71.6
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 9.6e-276 953.4 658 72.5
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 9.6e-276 953.4 673 71.9
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 1.1e-274 949.9 603 79.1
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 5.3e-274 947.6 658 73.3
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 5.3e-274 947.6 652 71.9
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 2.9e-272 941.8 651 73.1
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 4.2e-271 937.9 660 72.1
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 5.5e-271 937.6 663 70.4
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 2.7e-270 935.3 664 70.5
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 1.8e-269 932.6 677 70.9
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 3.9e-269 931.4 663 70.0
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 1.1e-268 929.9 657 70.5
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 7.4e-268 927.2 649 71.5
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 4.8e-267 924.5 662 69.3
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 4.8e-267 924.5 663 69.7
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 1.5e-265 919.5 541 84.1
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 3.4e-265 918.3 603 74.6
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 4.5e-265 917.9 664 69.4
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 1.7e-264 916.0 651 70.7
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 6.5e-264 914.1 624 73.7
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 8.4e-264 913.7 603 75.6
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 4.2e-263 911.4 660 70.2
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 5.5e-263 911.0 677 68.7
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 9.3e-263 910.2 604 74.3
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 2.3e-261 905.6 604 74.2
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 8.7e-261 903.7 602 74.9
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 9.6e-260 900.2 651 70.4
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 2.1e-259 899.0 606 73.9
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 6.5e-256 887.5 726 63.2
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 5.5e-255 884.4 649 71.0
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 2.9e-240 835.5 626 67.1
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 5.3e-234 814.7 651 64.8
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 8.5e-232 807.4 519 76.1
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.8e-226 789.6 675 61.3
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 2.5e-223 779.2 469 83.4
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 2.7e-222 775.8 779 53.8
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 1.4e-221 773.5 677 61.2
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.4e-218 762.7 780 51.9
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.2e-217 760.4 772 51.8
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 9.4e-215 750.7 838 50.5
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 2.1e-214 749.6 845 48.6
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 6.8e-205 718.0 452 77.7
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 7.0e-202 708.0 594 61.6
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 7.1e-186 654.8 660 51.7
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 6.6e-184 648.3 423 76.1
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.2e-169 600.9 541 58.6
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.8e-163 579.3 435 69.2
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 5.6e-159 565.5 545 52.3
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 2.4e-125 453.8 311 73.6
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 9.7e-119 431.8 398 59.0
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 3.2e-114 416.8 262 78.2
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.1e-106 391.7 342 57.9
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 5.9e-100 369.4 258 69.8
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 3.4e-95 353.6 215 78.6
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 2.3e-83 314.3 339 50.4
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 6.6e-83 312.8 546 39.0
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 3.4e-63 247.3 153 76.5
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 5.1e-43 180.3 140 62.9
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 6.7e-43 179.9 134 64.9
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 5.8e-39 166.8 470 27.9
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 8.8e-19 99.8 63 74.6
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 1.1e-18 99.4 76 71.1
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 9.7e-10 69.7 47 63.8
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 8.2e-09 66.6 49 73.5
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.2e-07 62.8 48 62.5
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 2.0e-07 62.0 42 71.4


User provided reference genes

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