Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 0.0e+00 1214.1 681 100.0
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 0.0e+00 1119.8 681 90.0
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 6.6e-309 1063.5 684 86.4
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.1e-306 1056.2 685 86.4
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 9.0e-306 1053.1 682 84.5
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 1.5e-305 1052.4 685 83.5
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 7.6e-305 1050.0 685 83.5
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 2.4e-303 1045.0 686 84.0
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 3.3e-300 1034.6 684 83.5
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.7e-299 1031.2 685 81.8
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 3.1e-298 1028.1 685 83.8
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 4.5e-297 1024.2 685 83.1
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 7.6e-297 1023.5 681 83.6
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.0e-296 1023.1 682 84.8
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.0e-296 1023.1 667 84.9
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 4.9e-296 1020.8 655 84.7
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 6.5e-296 1020.4 681 83.4
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 1.1e-295 1019.6 682 84.3
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 1.1e-295 1019.6 685 82.5
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 1.9e-295 1018.8 686 83.8
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 4.2e-295 1017.7 681 83.3
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 7.1e-295 1016.9 682 84.2
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 3.0e-293 1011.5 688 80.5
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 5.1e-293 1010.7 687 82.0
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 8.7e-293 1010.0 687 80.2
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 8.7e-293 1010.0 686 81.0
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.5e-292 1008.4 685 80.6
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 4.3e-292 1007.7 689 80.1
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.7e-292 1007.3 684 81.0
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 9.6e-292 1006.5 685 81.9
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.1e-290 1003.0 686 79.2
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 1.8e-290 1002.3 687 80.5
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 3.1e-290 1001.5 689 80.8
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 3.1e-290 1001.5 686 80.6
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 6.9e-290 1000.3 684 81.6
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 6.9e-290 1000.3 668 80.5
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 3.4e-289 998.0 653 83.6
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.5e-289 997.7 682 81.5
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.0e-288 996.5 746 74.3
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.7e-288 995.7 746 74.3
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 2.2e-288 995.3 687 80.5
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.9e-288 995.0 682 83.3
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 6.5e-288 993.8 663 81.1
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 8.4e-288 993.4 685 78.5
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 1.4e-287 992.6 687 79.8
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 5.5e-287 990.7 686 80.0
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 9.3e-287 989.9 663 81.0
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.6e-286 989.2 683 81.8
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 2.1e-286 988.8 687 82.5
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 2.7e-286 988.4 667 80.5
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 2.3e-285 985.3 667 80.1
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 8.7e-285 983.4 731 76.7
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 5.7e-284 980.7 685 80.6
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 7.4e-284 980.3 684 80.7
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 1.3e-283 979.5 667 79.6
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.6e-283 979.2 664 80.6
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 1.4e-282 976.1 683 79.6
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 2.4e-282 975.3 667 79.5
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 3.1e-282 974.9 692 81.2
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 9.0e-282 973.4 680 79.9
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 2.0e-281 972.2 686 80.0
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 3.4e-281 971.5 686 78.4
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 1.0e-280 969.9 694 78.7
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 2.2e-280 968.8 685 77.4
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 2.5e-279 965.3 723 75.7
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 2.1e-278 962.2 689 79.2
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 1.4e-277 959.5 723 75.2
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 1.8e-277 959.1 691 76.3
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 3.0e-277 958.4 667 78.7
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 5.1e-277 957.6 660 80.2
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.3e-275 953.0 667 78.1
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 2.8e-275 951.8 692 77.3
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 3.7e-275 951.4 667 78.1
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 2.0e-273 945.7 691 76.1
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 2.6e-273 945.3 691 76.1
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 1.2e-270 936.4 667 77.5
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 2.1e-270 935.6 685 77.1
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 7.9e-270 933.7 667 77.1
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 7.9e-270 933.7 667 77.1
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 7.4e-268 927.2 667 76.8
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.2e-265 919.8 689 75.0
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.5e-265 919.5 1035 57.2
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.3e-264 916.4 667 76.0
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.3e-264 916.4 689 74.0
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 2.5e-263 912.1 682 74.6
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 2.5e-263 912.1 654 76.6
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.4e-261 906.4 684 76.0
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 1.8e-261 906.0 637 80.7
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 4.0e-261 904.8 685 74.7
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 9.7e-260 900.2 698 72.6
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 1.3e-259 899.8 690 73.9
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 1.3e-259 899.8 690 73.9
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 1.7e-259 899.4 679 72.0
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 6.3e-259 897.5 684 73.7
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 8.2e-259 897.1 669 75.3
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 1.1e-258 896.7 682 73.0
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.7e-256 889.4 733 70.3
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 1.1e-255 886.7 572 85.0
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 3.2e-255 885.2 692 73.6
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.8e-253 879.4 684 71.9
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.2e-252 876.7 684 71.9
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 2.6e-252 875.5 608 81.1
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.3e-251 870.5 718 70.3
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 2.7e-249 865.5 670 73.4
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 4.2e-247 858.2 607 79.1
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 1.5e-244 849.7 651 73.0
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 4.4e-244 848.2 670 73.6
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 8.3e-243 844.0 719 68.0
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 9.8e-236 820.5 739 65.4
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 8.3e-235 817.4 678 69.0
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 9.2e-234 813.9 664 68.5
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 2.9e-232 808.9 654 69.6
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 1.9e-215 753.1 659 64.3
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 2.5e-215 752.7 703 64.9
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 3.6e-214 748.8 650 64.6
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 1.5e-212 743.4 547 77.0
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 8.1e-206 721.1 660 61.5
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 2.0e-204 716.5 651 63.1
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 5.9e-164 582.0 676 51.6
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 3.8e-163 579.3 424 77.4
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.1e-161 573.5 401 80.3
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.0e-152 544.7 368 79.6
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 4.4e-127 459.5 342 69.6
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 3.1e-125 453.4 565 51.5
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 2.3e-99 367.5 398 58.5
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.7e-91 341.3 501 48.3
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 4.7e-89 333.2 510 47.5
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 4.6e-76 290.0 718 31.5
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 6.0e-76 289.7 272 63.2
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 5.0e-54 216.9 775 31.6
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.1e-50 205.7 196 60.7
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.4e-48 198.7 560 32.5
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.3e-46 192.2 156 67.9
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 6.5e-46 189.9 129 73.6
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 1.4e-43 182.2 124 78.2
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.8e-38 164.1 94 87.2
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 2.7e-28 131.3 602 26.7
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 2.6e-26 124.8 91 78.0
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 2.6e-26 124.8 674 24.6
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.6e-18 98.2 71 71.8
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 7.0e-16 90.1 109 57.8
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 2.7e-15 88.2 705 22.4
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 2.3e-11 75.1 82 56.1
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 1.3e-09 69.3 82 54.9
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.7e-09 67.8 199 34.2
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 2.4e-08 65.1 43 74.4
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 7.0e-08 63.5 54 61.1


User provided reference genes

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