Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 8.9e-59 229.9 107 100.0
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 7.8e-55 216.9 107 92.5
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 2.8e-52 208.4 104 88.5
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 1.1e-51 206.5 104 88.5
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 1.4e-51 206.1 104 88.5
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 6.8e-51 203.8 107 86.9
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 8.9e-51 203.4 107 89.7
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 8.9e-51 203.4 107 89.7
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 1.2e-50 203.0 107 86.0
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 1.2e-50 203.0 107 86.9
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 1.5e-50 202.6 108 85.2
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 2.0e-50 202.2 106 84.9
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.4e-50 201.4 107 85.0
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.4e-50 201.4 107 85.0
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 5.8e-50 200.7 107 87.9
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 7.5e-50 200.3 107 85.0
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 7.5e-50 200.3 107 85.0
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 7.5e-50 200.3 107 81.3
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 1.3e-49 199.5 107 86.0
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 1.3e-49 199.5 107 86.0
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 1.7e-49 199.1 107 85.0
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 1.7e-49 199.1 107 81.3
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 2.2e-49 198.7 107 84.1
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.9e-49 198.4 107 85.0
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.9e-49 198.4 107 85.0
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 2.9e-49 198.4 107 84.1
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 2.9e-49 198.4 107 84.1
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 3.7e-49 198.0 107 83.2
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 4.9e-49 197.6 107 83.2
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 6.4e-49 197.2 107 83.2
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 8.3e-49 196.8 107 86.0
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 8.3e-49 196.8 107 86.0
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 8.3e-49 196.8 107 82.2
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 8.3e-49 196.8 107 84.1
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 1.1e-48 196.4 104 83.7
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 1.1e-48 196.4 107 83.2
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 1.1e-48 196.4 106 84.0
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 1.4e-48 196.1 107 82.2
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 1.9e-48 195.7 107 86.0
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 1.9e-48 195.7 108 86.1
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 2.4e-48 195.3 107 82.2
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 4.1e-48 194.5 102 85.3
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 7.1e-48 193.7 106 84.0
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 9.2e-48 193.4 107 81.3
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 9.2e-48 193.4 98 85.7
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 9.2e-48 193.4 98 85.7
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 1.2e-47 193.0 107 81.3
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.2e-47 193.0 108 85.2
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 1.6e-47 192.6 107 80.4
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 1.6e-47 192.6 107 79.4
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 1.6e-47 192.6 107 80.4
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.6e-47 192.6 107 81.3
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.6e-47 192.6 108 84.3
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 1.6e-47 192.6 107 81.3
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 1.6e-47 192.6 108 83.3
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 2.1e-47 192.2 107 79.4
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 2.1e-47 192.2 107 80.4
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 79.4
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 79.4
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 79.4
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 80.4
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 2.7e-47 191.8 107 78.5
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 2.7e-47 191.8 104 80.8
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 3.5e-47 191.4 104 80.8
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 3.5e-47 191.4 104 82.7
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 4.6e-47 191.0 102 85.3
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 79.4
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 79.4
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 80.4
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 6.0e-47 190.7 97 87.6
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 6.0e-47 190.7 107 81.3
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 7.8e-47 190.3 106 80.2
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 7.8e-47 190.3 107 82.2
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.3e-46 189.5 103 82.5
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 78.5
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 1.7e-46 189.1 107 78.5
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 1.7e-46 189.1 106 81.1
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 2.3e-46 188.7 106 80.2
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 2.3e-46 188.7 97 86.6
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 3.0e-46 188.3 103 82.5
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 3.0e-46 188.3 97 86.6
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 3.0e-46 188.3 97 86.6
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 3.0e-46 188.3 107 77.6
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 3.0e-46 188.3 103 82.5
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 5.1e-46 187.6 107 79.4
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 5.1e-46 187.6 107 79.4
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 5.1e-46 187.6 106 80.2
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 5.1e-46 187.6 106 82.1
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 5.1e-46 187.6 96 86.5
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 6.6e-46 187.2 107 79.4
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 6.6e-46 187.2 107 79.4
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 6.6e-46 187.2 107 79.4
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 6.6e-46 187.2 102 83.3
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 6.6e-46 187.2 107 77.6
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 1.1e-45 186.4 103 81.6
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 1.1e-45 186.4 102 81.4
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 1.5e-45 186.0 107 78.5
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.9e-45 185.7 107 77.6
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 1.9e-45 185.7 107 78.5
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 1.9e-45 185.7 96 87.5
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 4.3e-45 184.5 104 80.8
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 4.3e-45 184.5 105 78.1
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 9.5e-45 183.3 97 82.5
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 1.2e-44 183.0 101 78.2
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 1.6e-44 182.6 108 78.7
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.6e-44 182.6 108 78.7
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.6e-44 182.6 108 78.7
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.6e-44 182.6 108 78.7
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.6e-44 182.6 108 78.7
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 2.1e-44 182.2 97 84.5
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 2.1e-44 182.2 97 85.6
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 2.8e-44 181.8 97 83.5
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 2.8e-44 181.8 99 82.8
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 3.6e-44 181.4 96 86.5
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 3.6e-44 181.4 96 86.5
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 3.6e-44 181.4 95 82.1
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 6.2e-44 180.6 102 80.4
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 6.2e-44 180.6 101 82.2
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 8.1e-44 180.3 97 80.4
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 1.4e-43 179.5 97 83.5
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 2.4e-43 178.7 97 80.4
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 4.0e-43 177.9 100 82.0
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 8.9e-43 176.8 104 76.9
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 1.2e-42 176.4 98 79.6
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 1.2e-42 176.4 104 76.9
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 2.0e-42 175.6 101 83.2
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 3.8e-41 171.4 93 79.6
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 3.8e-41 171.4 100 79.0
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 3.8e-41 171.4 99 79.8
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 1.1e-40 169.9 98 78.6
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.2e-40 168.3 89 80.9
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 4.1e-40 167.9 96 75.0
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 5.4e-40 167.5 96 75.0
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.6e-39 166.0 94 78.7
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 5.2e-35 151.0 78 88.5
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 5.4e-32 141.0 85 76.5
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 9.3e-32 140.2 68 89.7
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 3.6e-28 128.3 75 78.7
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 8.1e-28 127.1 75 73.3
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 9.0e-27 123.6 93 61.3
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 1.5e-26 122.9 93 61.3
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 1.7e-25 119.4 88 62.5
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 2.2e-25 119.0 72 75.0
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 2.2e-25 119.0 84 63.1
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 6.4e-25 117.5 69 79.7
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 8.4e-25 117.1 70 75.7
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 3.2e-24 115.2 104 54.8
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 2.7e-23 112.1 83 56.6
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 6.7e-22 107.5 90 57.8
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 1.3e-20 103.2 60 73.3
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 2.2e-17 92.4 74 60.8
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 1.6e-15 86.3 71 52.1
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 1.9e-13 79.3 49 73.5
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 2.5e-13 79.0 54 66.7
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 1.2e-10 70.1 84 41.7
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 8.4e-09 63.9 37 78.4
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.1e-08 63.5 49 59.2
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 1.9e-08 62.8 37 78.4
GSVIVG01008282001 Vitis vinifera HOM05D004512 ORTHO05D005355 8.7e-06 53.9 28 78.6


User provided reference genes

Program Settings