Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 2.4e-78 295.4 150 100.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 5.6e-67 257.7 150 83.3
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 1.2e-66 256.5 148 84.5
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 3.1e-65 251.9 148 83.1
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 1.2e-64 250.0 147 81.0
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 3.4e-64 248.4 150 80.0
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 3.7e-63 245.0 150 78.7
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.7e-63 245.0 147 80.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 3.7e-63 245.0 147 80.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 3.7e-63 245.0 147 80.3
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.4e-62 243.0 150 79.3
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.4e-62 241.1 150 76.7
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.6e-61 239.6 150 76.0
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.5e-61 238.4 150 76.0
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 4.6e-61 238.0 150 76.7
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 4.6e-61 238.0 150 76.0
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 4.6e-61 238.0 150 78.0
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 6.0e-61 237.7 150 76.7
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 6.0e-61 237.7 147 77.6
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.0e-60 236.9 150 74.7
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.0e-60 236.9 150 74.0
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.0e-60 236.9 150 76.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.0e-60 236.9 150 76.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.3e-60 236.5 150 74.7
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 1.3e-60 236.5 149 77.2
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 3.0e-60 235.3 150 74.0
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 3.0e-60 235.3 150 74.0
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 3.0e-60 235.3 150 76.0
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 3.9e-60 235.0 150 74.0
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 5.1e-60 234.6 150 76.0
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 8.6e-60 233.8 150 77.3
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.5e-59 233.0 150 73.3
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 5.6e-59 231.1 150 76.7
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 5.6e-59 231.1 150 72.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 7.3e-59 230.7 149 73.2
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 7.3e-59 230.7 150 76.0
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.6e-58 229.6 150 73.3
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.8e-58 228.8 149 71.1
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.8e-58 228.8 150 73.3
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 3.6e-58 228.4 150 75.3
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 6.2e-58 227.6 162 69.1
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.4e-57 226.5 150 71.3
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.8e-57 226.1 149 71.8
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 4.0e-57 224.9 150 72.0
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 4.0e-57 224.9 150 71.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 5.2e-57 224.6 150 73.3
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 6.8e-57 224.2 150 71.3
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 1.2e-56 223.4 150 72.7
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.2e-56 223.4 150 72.7
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.2e-56 223.4 150 72.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 1.5e-56 223.0 150 70.7
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 2.0e-56 222.6 150 70.7
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 3.4e-56 221.9 150 72.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 71.3
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 71.3
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 69.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 3.8e-55 218.4 150 70.7
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 4.9e-55 218.0 150 71.3
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 6.4e-55 217.6 181 63.0
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.1e-54 216.9 150 70.0
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.1e-54 216.9 144 72.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-54 216.9 145 72.4
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-54 216.9 145 72.4
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-54 216.9 144 72.9
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.1e-54 216.9 144 72.9
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.9e-54 216.1 157 67.5
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.9e-54 216.1 135 78.5
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 2.4e-54 215.7 151 68.2
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.4e-54 215.7 144 72.2
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 2.4e-54 215.7 147 70.7
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 3.2e-54 215.3 146 68.5
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.2e-54 215.3 144 72.2
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 4.1e-54 214.9 150 70.7
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 5.4e-54 214.5 148 68.9
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 5.4e-54 214.5 150 71.3
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 9.2e-54 213.8 150 68.7
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.2e-53 213.4 148 73.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 1.6e-53 213.0 147 68.7
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 68.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 3.5e-53 211.8 160 65.0
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 6.0e-53 211.1 148 68.9
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 6.0e-53 211.1 147 68.0
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 6.0e-53 211.1 147 67.3
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 7.8e-53 210.7 148 65.5
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 7.8e-53 210.7 148 68.2
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 70.7
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.3e-52 209.9 150 70.0
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.7e-52 209.5 147 70.7
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 2.3e-52 209.1 149 68.5
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 3.0e-52 208.8 148 66.9
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 3.0e-52 208.8 149 67.8
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 66.7
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 3.9e-52 208.4 149 67.1
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 3.9e-52 208.4 150 67.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 5.1e-52 208.0 161 64.6
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 5.1e-52 208.0 149 67.1
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 5.1e-52 208.0 143 68.5
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 6.6e-52 207.6 149 68.5
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 8.6e-52 207.2 150 66.7
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 1.9e-51 206.1 149 65.1
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 1.9e-51 206.1 149 66.4
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 5.6e-51 204.5 149 65.8
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 7.3e-51 204.1 149 66.4
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 9.6e-51 203.8 149 63.8
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.2e-50 203.4 149 64.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.1e-50 202.6 147 66.7
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 2.8e-50 202.2 149 63.8
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 2.8e-50 202.2 149 65.1
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 4.7e-50 201.4 161 60.9
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.4e-49 199.9 149 63.8
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.4e-49 199.9 152 65.1
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 3.1e-49 198.7 149 64.4
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.0e-49 198.4 170 61.8
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 4.0e-49 198.4 222 50.5
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.5e-48 196.4 148 64.2
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 5.8e-48 194.5 140 64.3
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.3e-47 193.4 140 66.4
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.2e-47 192.6 150 64.0
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 3.8e-47 191.8 193 53.4
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 4.9e-47 191.4 148 62.8
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 6.4e-47 191.0 150 61.3
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 6.4e-47 191.0 150 61.3
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 6.4e-47 191.0 148 66.2
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.2e-46 188.3 150 60.7
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 4.2e-46 188.3 147 64.6
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 7.1e-46 187.6 150 60.7
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 7.1e-46 187.6 150 62.7
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 7.1e-46 187.6 140 64.3
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 2.7e-45 185.7 151 60.3
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 4.6e-45 184.9 143 61.5
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 4.6e-45 184.9 143 61.5
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 7.8e-45 184.1 143 61.5
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 2.3e-44 182.6 150 60.0
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.9e-44 181.8 144 61.8
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.6e-43 177.9 149 59.7
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 3.4e-40 168.7 142 62.0
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 3.2e-38 162.2 149 54.4
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 3.2e-38 162.2 153 54.9
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 4.6e-37 158.3 151 58.3
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 7.9e-37 157.5 108 69.4
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 7.9e-37 157.5 108 69.4
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 6.7e-36 154.5 149 53.7
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.9e-35 152.9 122 60.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 8.1e-34 147.5 105 67.6
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 4.0e-33 145.2 134 56.0
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 4.0e-33 145.2 134 56.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.6e-32 142.5 133 56.4
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 3.4e-32 142.1 151 51.0
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.3e-31 140.2 99 64.6
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.9e-31 139.0 89 70.8
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 6.4e-31 137.9 89 74.2
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 7.1e-30 134.4 89 73.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 9.3e-30 134.0 103 61.2
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 1.3e-28 130.2 149 46.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 9.6e-27 124.0 149 46.3
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.4e-25 120.2 80 66.2
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.0e-24 116.3 103 54.4
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 4.9e-23 111.7 139 40.3
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 8.4e-23 110.9 88 56.8
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.4e-22 110.2 86 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 2.7e-21 105.9 138 36.2
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 1.1e-19 100.5 149 40.9
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 4.3e-19 98.6 138 34.1
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.2e-16 90.5 149 32.2
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 3.4e-16 89.0 72 59.7
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 7.6e-16 87.8 102 44.1
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 2.2e-15 86.3 52 75.0
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.7e-13 79.3 86 52.3
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 6.1e-13 78.2 44 77.3
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 7.9e-13 77.8 107 30.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-12 77.0 87 43.7
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 1.1e-11 73.9 140 28.6
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 1.0e-07 60.8 127 23.6
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.4e-06 57.0 82 41.5
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.5e-06 56.2 46 54.3
BcaC02g08825 Brassica carinata HOM05D003922 ORTHO05D031941 9.4e-06 54.3 45 60.0


User provided reference genes

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