Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 6.4e-106 387.5 205 100.0
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 3.4e-75 285.4 210 77.6
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 2.5e-65 252.7 211 71.1
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 3.0e-63 245.7 211 67.3
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 1.1e-62 243.8 210 66.2
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 1.1e-62 243.8 209 66.5
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 1.9e-62 243.0 210 68.1
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 1.3e-61 240.4 213 66.7
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 1.6e-61 240.0 210 66.7
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 1.1e-60 237.3 210 67.6
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 1.2e-59 233.8 209 64.6
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 1.0e-58 230.7 210 64.8
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 1.1e-57 227.3 211 65.4
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 4.2e-57 225.3 210 64.3
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 4.2e-57 225.3 212 64.6
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 1.2e-56 223.8 209 63.2
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 4.6e-56 221.9 210 63.3
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 4.6e-56 221.9 208 63.5
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 3.0e-55 219.2 209 61.2
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 3.0e-55 219.2 212 63.7
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.2e-53 213.0 219 61.6
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 8.2e-53 211.1 214 63.1
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 3.1e-52 209.1 219 61.2
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 3.1e-52 209.1 219 61.2
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 5.3e-52 208.4 217 61.3
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 9.1e-52 207.6 210 62.4
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 1.5e-51 206.8 210 61.4
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 2.0e-51 206.5 214 62.1
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 1.1e-49 200.7 207 60.4
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 9.4e-49 197.6 217 57.6
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 1.2e-48 197.2 214 57.0
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 4.6e-48 195.3 215 58.1
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 5.1e-47 191.8 210 59.0
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 6.7e-47 191.4 214 56.5
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 2.0e-46 189.9 218 56.4
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 2.0e-46 189.9 220 55.9
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 2.6e-46 189.5 214 55.6
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 2.6e-46 189.5 208 59.6
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 4.4e-46 188.7 189 61.4
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 5.7e-46 188.3 223 58.3
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 5.7e-46 188.3 218 57.3
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.7e-45 186.8 208 59.1
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 2.2e-45 186.4 213 57.3
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 8.2e-45 184.5 212 56.6
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 1.4e-44 183.7 213 56.3
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 4.1e-44 182.2 186 60.2
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 5.3e-44 181.8 209 56.9
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 6.9e-44 181.4 218 56.9
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 1.2e-43 180.6 211 52.1
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 3.4e-43 179.1 213 56.3
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 7.7e-43 177.9 217 55.8
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 7.7e-43 177.9 208 56.2
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 1.0e-42 177.6 216 51.4
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 3.8e-42 175.6 214 55.6
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 8.5e-42 174.5 216 55.6
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 3.2e-41 172.6 208 55.3
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 3.2e-41 172.6 223 52.5
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 4.2e-41 172.2 211 53.6
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 5.5e-41 171.8 209 53.6
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 7.9e-40 167.9 205 54.1
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 8.8e-39 164.5 209 55.0
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 7.4e-38 161.4 217 52.1
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 1.3e-37 160.6 223 51.1
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 2.8e-37 159.5 220 51.4
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 3.7e-37 159.1 212 52.4
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 1.1e-36 157.5 214 52.8
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 1.1e-36 157.5 214 51.9
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 3.1e-36 156.0 209 51.2
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 5.3e-36 155.2 209 52.6
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 7.0e-36 154.8 218 50.5
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 3.5e-35 152.5 214 51.4
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 1.7e-34 150.2 217 51.2
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 1.7e-34 150.2 212 50.9
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.5e-33 146.4 209 50.2
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 2.5e-33 146.4 194 51.0
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 2.5e-33 146.4 194 52.6
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 4.2e-33 145.6 191 51.8
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 1.2e-32 144.1 205 49.3
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 1.4e-31 140.6 210 45.7
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 1.4e-31 140.6 245 45.7
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 4.0e-31 139.0 210 49.0
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 6.7e-31 138.3 195 51.8
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 6.7e-31 138.3 215 48.8
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 8.8e-31 137.9 221 50.2
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 1.2e-30 137.5 147 59.2
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 7.5e-30 134.8 177 54.2
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 7.5e-30 134.8 177 54.2
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 9.7e-30 134.4 207 47.3
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 1.7e-29 133.7 190 49.5
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 3.7e-29 132.5 195 49.2
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 4.8e-29 132.1 208 47.6
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 4.8e-29 132.1 208 47.6
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 6.3e-29 131.7 209 47.8
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 5.3e-28 128.6 204 46.6
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 7.0e-28 128.3 210 46.7
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 7.7e-27 124.8 224 44.6
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 2.2e-26 123.2 207 42.5
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 3.8e-26 122.5 206 46.6
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 5.0e-26 122.1 222 44.1
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 6.5e-26 121.7 124 61.3
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 1.2e-24 117.5 201 42.8
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 1.2e-24 117.5 201 42.8
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 1.6e-24 117.1 220 40.0
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 4.7e-24 115.5 213 42.3
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 4.7e-24 115.5 203 44.3
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 1.4e-23 114.0 220 39.1
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 1.4e-23 114.0 217 44.7
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 1.8e-23 113.6 201 42.8
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 2.3e-23 113.2 178 44.9
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 4.0e-23 112.5 201 42.3
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 8.8e-23 111.3 206 43.7
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 5.7e-22 108.6 168 47.6
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 3.5e-19 99.4 182 42.3
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 7.7e-19 98.2 213 40.4
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 8.6e-18 94.7 214 37.4
Gohir.A02G084300 Gossypium hirsutum HOM05D005571 ORTHO05D006919 1.1e-17 94.4 140 47.9
HPP92_021048 Vanilla planifolia HOM05D005571 ORTHO05D006919 2.1e-16 90.1 203 40.4
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 2.8e-16 89.7 87 57.5
Duzib128G0429 Durio zibethinus HOM05D005571 ORTHO05D006919 6.8e-15 85.1 91 58.2
Thecc.04G308600 Theobroma cacao HOM05D005571 ORTHO05D006919 1.5e-14 84.0 72 61.1
Thecc.06G128900 Theobroma cacao HOM05D005571 ORTHO05D006919 2.6e-14 83.2 72 59.7
Sc15g0004410 Simmondsia chinensis HOM05D005571 ORTHO05D006919 1.3e-13 80.9 174 40.8
CDE05G1909 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 2.8e-13 79.7 178 38.8
Thecc.07G149400 Theobroma cacao HOM05D005571 ORTHO05D004433 4.9e-13 79.0 78 56.4
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 2.4e-12 76.6 174 40.2
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 9.2e-12 74.7 173 41.0
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 2.0e-11 73.6 173 40.5
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 2.0e-11 73.6 173 40.5
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 2.7e-11 73.2 202 35.6
AUR62036861 Chenopodium quinoa HOM05D005571 ORTHO05D006919 3.5e-11 72.8 193 37.3
Sabra11G0115000 Salix brachista HOM05D005571 ORTHO05D006919 3.5e-11 72.8 80 55.0
Sabra11G0115600 Salix brachista HOM05D005571 ORTHO05D006919 3.5e-11 72.8 80 55.0
Os07g0474300 Oryza sativa ssp. japonica HOM05D033341 ORTHO05D036979 2.9e-10 69.7 249 34.5
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 7.3e-09 65.1 105 46.7
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 7.3e-09 65.1 105 46.7
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 1.2e-08 64.3 147 39.5
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 2.8e-08 63.2 105 45.7
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 2.8e-08 63.2 105 45.7
Solyc04g082380.4 Solanum lycopersicum HOM05D005571 ORTHO05D006919 1.4e-07 60.8 116 42.2
Zm00001eb320020 Zea mays HOM05D033341 ORTHO05D036979 1.5e-06 57.4 282 30.1


User provided reference genes

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