Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 4.0e-176 621.3 314 100.0
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 2.1e-148 529.3 314 81.8
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.1e-148 529.3 314 83.1
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 4.6e-148 528.1 314 82.8
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.0e-147 526.9 308 83.8
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.3e-147 525.8 314 81.8
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 1.1e-146 523.5 314 81.5
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 1.1e-146 523.5 314 82.2
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 1.1e-146 523.5 314 82.2
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 1.1e-146 523.5 308 82.8
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.5e-146 523.1 315 82.2
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.9e-146 522.7 313 82.7
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 3.3e-146 521.9 314 81.8
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 7.4e-146 520.8 314 80.3
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 7.4e-146 520.8 314 81.2
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 2.8e-145 518.8 314 81.8
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 2.8e-145 518.8 314 80.9
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 2.8e-145 518.8 314 82.2
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.8e-145 518.8 314 81.2
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 4.8e-145 518.1 314 80.3
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 4.8e-145 518.1 314 81.2
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 1.4e-144 516.5 308 82.5
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 1.4e-144 516.5 315 82.9
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 3.1e-144 515.4 327 79.8
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 3.1e-144 515.4 315 80.6
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 4.1e-144 515.0 314 82.5
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.4e-143 511.9 334 76.6
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 4.5e-143 511.5 320 80.3
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 5.9e-143 511.1 305 81.6
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-142 509.2 300 84.3
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 6.5e-142 507.7 300 84.0
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.4e-141 506.5 312 82.1
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.4e-141 506.5 300 82.7
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 3.2e-141 505.4 314 78.3
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 9.4e-141 503.8 316 79.4
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 2.7e-140 502.3 301 81.7
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 6.7e-139 497.7 371 70.1
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.1e-138 496.9 306 79.7
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 1.5e-138 496.5 314 78.3
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 2.0e-138 496.1 326 75.5
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.5e-138 495.7 300 80.3
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 2.5e-138 495.7 314 78.3
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 4.3e-138 495.0 283 84.5
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 5.7e-138 494.6 300 80.7
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 5.7e-138 494.6 314 78.7
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 5.7e-138 494.6 301 80.4
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 7.4e-138 494.2 309 78.3
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 9.7e-138 493.8 311 79.4
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 9.7e-138 493.8 300 80.3
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 1.3e-137 493.4 316 75.9
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 1.7e-137 493.0 300 81.0
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 2.8e-137 492.3 305 79.3
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 6.3e-137 491.1 300 79.7
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 6.3e-137 491.1 315 76.2
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 8.2e-137 490.7 306 78.4
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 6.9e-136 487.6 316 77.2
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 9.1e-136 487.3 283 84.1
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.5e-135 486.5 337 73.0
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 3.4e-135 485.3 300 78.7
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 7.7e-135 484.2 314 76.4
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 7.7e-135 484.2 299 80.6
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 1.0e-134 483.8 306 77.8
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 1.7e-134 483.0 307 78.2
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 6.5e-134 481.1 314 75.8
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 6.5e-134 481.1 310 74.8
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 6.5e-134 481.1 316 75.0
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.4e-133 479.9 300 78.3
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.9e-133 479.6 309 74.4
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 1.2e-132 476.9 310 75.5
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.2e-132 476.9 349 70.2
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 1.6e-132 476.5 314 76.1
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 3.6e-132 475.3 300 76.0
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.4e-131 473.4 282 82.3
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.8e-131 473.0 309 73.8
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 2.3e-131 472.6 314 73.2
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 6.7e-131 471.1 306 77.1
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 6.7e-131 471.1 313 71.6
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 8.8e-131 470.7 340 70.9
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.7e-129 466.5 367 66.8
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 2.8e-129 465.7 303 74.6
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 6.3e-129 464.5 283 80.9
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-128 463.8 279 83.5
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 1.1e-128 463.8 303 72.9
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 1.0e-126 457.2 303 72.9
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 2.9e-126 455.7 306 73.5
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 2.9e-126 455.7 306 73.5
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 2.5e-125 452.6 306 72.5
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 3.2e-125 452.2 305 72.5
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 4.2e-125 451.8 306 72.9
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 4.2e-125 451.8 306 72.9
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 8.0e-124 447.6 304 72.4
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.4e-123 446.8 305 71.5
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 1.8e-123 446.4 304 72.0
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 2.3e-123 446.0 345 67.0
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 2.3e-123 446.0 286 77.6
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 4.0e-123 445.3 303 71.3
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 6.7e-123 444.5 309 69.9
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 8.8e-123 444.1 306 69.3
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 2.6e-122 442.6 309 69.6
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 4.4e-122 441.8 292 74.3
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 5.7e-122 441.4 298 70.5
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 7.0e-120 434.5 315 65.7
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 9.1e-120 434.1 250 86.8
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 3.5e-119 432.2 306 70.9
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 5.7e-114 414.8 309 68.9
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 7.5e-114 414.5 251 81.7
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 2.8e-113 412.5 250 80.8
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 3.7e-113 412.1 250 82.8
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 4.8e-113 411.8 299 70.9
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 1.2e-111 407.1 335 63.9
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.6e-108 395.6 293 70.3
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.1e-101 374.0 259 73.7
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 6.8e-99 364.8 315 62.5
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.2e-98 364.0 300 58.7
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.6e-92 343.6 227 74.9
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-90 337.4 235 75.7
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 4.1e-88 328.9 210 77.6
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 2.7e-79 299.7 191 80.1
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 1.5e-77 293.9 208 71.6
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 3.6e-76 289.3 342 45.9
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.3e-73 280.8 186 74.2
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 9.6e-61 238.0 309 46.0
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 1.3e-57 227.6 178 69.7
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-57 227.3 300 45.3
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 2.2e-57 226.9 142 81.0
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.4e-56 223.4 164 68.9
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 4.8e-52 209.1 324 38.6
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 6.2e-52 208.8 170 63.5
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 7.1e-40 168.7 117 69.2
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 1.2e-39 167.9 112 76.8
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 8.7e-38 161.8 100 79.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 3.2e-32 143.3 91 80.2
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 2.8e-28 130.2 176 45.5
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 3.1e-27 126.7 79 79.7
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 5.9e-26 122.5 85 74.1
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 2.1e-23 114.0 67 82.1
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 7.4e-21 105.5 77 71.4
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 4.2e-16 89.7 57 73.7
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-13 81.3 103 49.5
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 7.4e-13 79.0 40 82.5
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 1.1e-11 75.1 49 65.3


User provided reference genes

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