Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 9.3e-77 290.0 137 100.0
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.6e-68 262.7 137 89.1
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 9.6e-58 226.9 137 74.5
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 9.6e-58 226.9 137 75.2
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 2.8e-57 225.3 137 73.7
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 5.3e-56 221.1 137 72.3
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 6.9e-56 220.7 137 72.3
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 7.6e-55 217.2 136 71.3
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 7.6e-55 217.2 136 71.3
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 1.3e-54 216.5 137 69.3
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 1.7e-54 216.1 137 70.1
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 6.5e-54 214.2 136 69.1
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 6.5e-54 214.2 137 70.1
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 6.5e-54 214.2 137 68.6
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 8.4e-54 213.8 137 68.6
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 8.4e-54 213.8 137 68.6
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.4e-53 213.0 137 67.9
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 1.9e-53 212.6 137 68.6
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 4.2e-53 211.5 137 72.3
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 1.2e-52 209.9 137 67.2
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.2e-52 209.9 137 68.6
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.6e-52 209.5 137 66.4
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 7.9e-52 207.2 137 67.2
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 2.3e-51 205.7 137 66.4
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 3.0e-51 205.3 132 67.4
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 5.1e-51 204.5 137 70.1
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 1.5e-50 203.0 137 66.4
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.5e-50 203.0 137 65.0
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 3.3e-50 201.8 137 65.7
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 1.3e-49 199.9 137 63.5
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 2.2e-49 199.1 137 65.0
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.8e-49 198.7 137 65.7
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.8e-49 198.7 137 65.7
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 2.8e-49 198.7 137 66.4
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 4.8e-49 198.0 137 63.5
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 6.3e-49 197.6 137 63.5
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 8.2e-49 197.2 137 67.9
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 1.4e-48 196.4 141 64.5
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.8e-48 196.1 137 62.0
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 2.4e-48 195.7 139 62.6
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 3.1e-48 195.3 148 58.8
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 4.1e-48 194.9 137 64.2
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 5.3e-48 194.5 139 60.4
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 5.3e-48 194.5 137 60.6
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.5e-47 193.0 139 59.7
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 2.0e-47 192.6 137 62.0
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 2.6e-47 192.2 137 63.5
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 4.5e-47 191.4 137 61.3
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 4.5e-47 191.4 137 65.7
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 4.5e-47 191.4 137 65.7
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 5.9e-47 191.0 137 65.0
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.3e-46 189.9 148 59.5
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.2e-46 189.1 124 66.9
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 8.5e-46 187.2 137 62.0
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.4e-45 186.4 137 59.1
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.9e-45 186.0 136 59.6
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 1.9e-45 186.0 137 59.1
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 4.2e-45 184.9 136 61.8
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 5.5e-45 184.5 137 59.1
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 1.2e-44 183.3 137 57.7
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 3.6e-44 181.8 137 56.9
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 4.6e-44 181.4 137 56.9
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 4.6e-44 181.4 137 56.9
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 4.6e-44 181.4 137 56.9
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 4.6e-44 181.4 137 56.9
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 4.6e-44 181.4 137 58.4
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 7.9e-44 180.6 138 58.0
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 7.9e-44 180.6 138 58.0
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 7.9e-44 180.6 137 57.7
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 7.9e-44 180.6 137 58.4
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 1.8e-43 179.5 137 60.6
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 2.3e-43 179.1 137 56.9
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 2.3e-43 179.1 137 56.9
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 2.3e-43 179.1 136 58.1
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 6.7e-43 177.6 138 55.8
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 6.7e-43 177.6 137 56.2
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 8.8e-43 177.2 137 56.9
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 8.8e-43 177.2 122 66.4
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.1e-42 176.8 137 56.9
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.5e-42 176.4 137 56.9
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.5e-42 176.4 137 60.6
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.5e-42 176.4 137 60.6
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 2.0e-42 176.0 137 56.9
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 3.3e-42 175.3 141 56.7
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 4.3e-42 174.9 137 55.5
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 5.7e-42 174.5 137 55.5
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 9.7e-42 173.7 137 55.5
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 9.7e-42 173.7 137 55.5
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 9.7e-42 173.7 137 55.5
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 1.7e-41 172.9 137 55.5
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 2.8e-41 172.2 137 55.5
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 2.8e-41 172.2 137 51.8
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 2.8e-41 172.2 163 49.7
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 3.7e-41 171.8 137 54.7
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 6.3e-41 171.0 137 54.7
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 6.3e-41 171.0 137 52.6
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 8.2e-41 170.6 137 52.6
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 1.1e-40 170.2 135 56.3
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 1.4e-40 169.9 131 54.2
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 1.4e-40 169.9 137 54.0
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.4e-40 169.9 153 54.2
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 1.8e-40 169.5 162 52.5
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 3.1e-40 168.7 136 58.1
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 3.1e-40 168.7 174 46.6
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 4.1e-40 168.3 136 55.1
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 5.3e-40 167.9 110 70.0
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 1.2e-39 166.8 170 47.1
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.0e-39 166.0 136 52.9
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 2.6e-39 165.6 131 52.7
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 2.6e-39 165.6 136 54.4
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 3.4e-39 165.2 136 54.4
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 3.8e-38 161.8 136 52.9
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 1.9e-37 159.5 109 63.3
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 7.2e-37 157.5 135 51.1
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 7.4e-34 147.5 137 55.5
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 1.3e-33 146.7 104 59.6
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 1.4e-32 143.3 142 49.3
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 5.3e-32 141.4 136 49.3
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.6e-31 139.0 106 54.7
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 4.5e-31 138.3 159 42.8
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.0e-30 137.1 138 45.7
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 2.2e-30 136.0 120 54.2
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 1.1e-29 133.7 106 58.5
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 1.1e-29 133.7 138 44.9
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 1.6e-28 129.8 137 46.0
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.1e-28 129.4 89 66.3
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 1.0e-27 127.1 137 50.4
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.4e-27 126.7 109 56.0
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 2.3e-27 125.9 130 43.1
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 7.4e-26 120.9 183 37.2
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.8e-24 116.3 146 38.4
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 7.0e-24 114.4 162 38.3
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 5.9e-23 111.3 62 79.0
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 3.6e-20 102.1 140 35.7
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 4.7e-20 101.7 138 37.7
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 8.0e-20 100.9 98 45.9
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 3.7e-17 92.0 137 35.8
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 8.3e-17 90.9 136 32.4
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 5.3e-16 88.2 105 38.1
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.6e-15 86.7 55 67.3
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.7e-14 83.2 66 60.6
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 6.5e-14 81.3 66 57.6
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 4.0e-11 72.0 63 55.6
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 8.8e-11 70.9 126 33.3
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 1.7e-09 66.6 75 38.7
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 8.6e-06 54.3 35 65.7


User provided reference genes

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