Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 1.1e-56 223.0 106 100.0
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 4.6e-23 111.3 70 71.4
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 3.3e-21 105.1 103 61.2
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 5.6e-21 104.4 105 57.1
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.6e-20 102.8 119 48.7
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 1.1e-19 100.1 110 52.7
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.4e-19 99.8 103 52.4
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.9e-19 97.1 100 56.0
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 8.9e-19 97.1 117 49.6
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 2.0e-18 95.9 100 55.0
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 2.0e-18 95.9 119 45.4
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 2.6e-18 95.5 100 54.0
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 1.3e-17 93.2 108 52.8
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 1.3e-17 93.2 102 52.0
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.7e-17 92.8 115 49.6
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.1e-16 90.1 110 43.6
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-16 89.7 118 49.2
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 3.2e-16 88.6 99 49.5
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 4.1e-16 88.2 105 46.7
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 4.1e-16 88.2 115 47.8
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 5.4e-16 87.8 117 47.9
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 7.1e-16 87.4 106 44.3
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 9.2e-16 87.0 105 47.6
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.2e-15 86.7 118 48.3
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 1.6e-15 86.3 106 48.1
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 2.1e-15 85.9 111 46.8
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 2.7e-15 85.5 113 46.0
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 2.7e-15 85.5 111 45.9
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 3.5e-15 85.1 95 49.5
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 4.6e-15 84.7 117 46.2
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 4.6e-15 84.7 99 49.5
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 6.0e-15 84.3 108 43.5
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 1.0e-14 83.6 116 47.4
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 1.3e-14 83.2 71 59.2
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 1.3e-14 83.2 123 46.3
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.0e-14 82.0 114 47.4
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 5.1e-14 81.3 104 47.1
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 6.6e-14 80.9 109 44.0
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 8.6e-14 80.5 114 46.5
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.1e-13 80.1 107 43.9
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.1e-13 80.1 107 46.7
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 1.1e-13 80.1 118 45.8
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 1.1e-13 80.1 116 43.1
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 1.9e-13 79.3 110 46.4
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 2.5e-13 79.0 107 45.8
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 3.3e-13 78.6 117 42.7
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 4.3e-13 78.2 110 48.2
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 9.5e-13 77.0 57 66.7
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 9.5e-13 77.0 117 44.4
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 1.2e-12 76.6 107 44.9
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 2.1e-12 75.9 111 42.3
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.6e-12 75.1 99 45.5
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 3.6e-12 75.1 117 42.7
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 3.6e-12 75.1 65 64.6
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 4.7e-12 74.7 115 42.6
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 4.7e-12 74.7 106 44.3
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 4.7e-12 74.7 108 47.2
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.2e-12 74.3 128 41.4
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 6.2e-12 74.3 102 45.1
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 6.2e-12 74.3 106 43.4
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.4e-11 73.2 57 59.6
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 1.8e-11 72.8 58 60.3
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 1.8e-11 72.8 105 41.0
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 2.3e-11 72.4 128 42.2
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 2.3e-11 72.4 108 42.6
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.3e-11 72.4 108 42.6
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 3.1e-11 72.0 102 48.0
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 3.1e-11 72.0 110 42.7
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 4.0e-11 71.6 61 63.9
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 4.0e-11 71.6 107 40.2
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 4.0e-11 71.6 107 41.1
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 4.0e-11 71.6 67 55.2
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 5.2e-11 71.2 100 42.0
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 5.2e-11 71.2 108 40.7
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 5.2e-11 71.2 70 52.9
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 8.9e-11 70.5 108 42.6
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 8.9e-11 70.5 107 45.8
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 1.2e-10 70.1 115 42.6
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.5e-10 69.7 106 44.3
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.5e-10 69.7 109 47.7
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 2.0e-10 69.3 96 43.8
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.6e-10 68.9 59 61.0
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 2.6e-10 68.9 118 35.6
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 2.6e-10 68.9 112 42.9
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 3.4e-10 68.6 116 40.5
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 3.4e-10 68.6 109 40.4
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 3.4e-10 68.6 111 43.2
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 4.4e-10 68.2 115 41.7
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 4.4e-10 68.2 116 39.7
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.4e-10 68.2 114 39.5
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 4.4e-10 68.2 104 43.3
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 4.4e-10 68.2 111 37.8
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 5.8e-10 67.8 109 44.0
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 7.6e-10 67.4 118 39.0
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 7.6e-10 67.4 118 39.0
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 7.6e-10 67.4 109 41.3
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 9.9e-10 67.0 116 39.7
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 9.9e-10 67.0 112 39.3
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 9.9e-10 67.0 112 40.2
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 9.9e-10 67.0 59 59.3
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 9.9e-10 67.0 107 43.0
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.3e-09 66.6 110 43.6
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 1.3e-09 66.6 119 39.5
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.3e-09 66.6 103 43.7
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 1.7e-09 66.2 104 39.4
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 1.7e-09 66.2 104 39.4
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 3.8e-09 65.1 96 41.7
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 3.8e-09 65.1 109 43.1
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 3.8e-09 65.1 111 40.5
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.9e-09 64.7 106 37.7
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 4.9e-09 64.7 106 37.7
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 4.9e-09 64.7 113 44.2
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.4e-09 64.3 103 42.7
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 6.4e-09 64.3 104 40.4
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 8.4e-09 63.9 100 38.0
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 8.4e-09 63.9 111 38.7
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-08 63.2 110 38.2
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 1.9e-08 62.8 80 46.2
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 2.4e-08 62.4 68 52.9
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 2.4e-08 62.4 114 40.4
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 3.2e-08 62.0 68 52.9
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 3.2e-08 62.0 98 40.8
CARHR039040 Cardamine hirsuta HOM05D012335 ORTHO05D014421 1.6e-07 59.7 95 38.9
Medtr4g082920 Medicago truncatula HOM05D007541 ORTHO05D009404 2.1e-07 59.3 80 43.8
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 2.1e-07 59.3 116 37.1
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 2.7e-07 58.9 117 35.0
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 2.7e-07 58.9 106 36.8
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 3.5e-07 58.5 111 36.9
MELO3C012140.2 Cucumis melo HOM05D007541 ORTHO05D009404 1.0e-06 57.0 43 62.8
AL1G55880 Arabidopsis lyrata HOM05D012335 ORTHO05D014421 2.3e-06 55.8 102 39.2
Carub.0001s3819 Capsella rubella HOM05D012335 ORTHO05D014421 2.3e-06 55.8 58 46.6
CiPaw.05G127200 Carya illinoinensis HOM05D007541 ORTHO05D009404 2.3e-06 55.8 46 60.9
CsaV3_5G033190 Cucumis sativus L. HOM05D007541 ORTHO05D009404 5.1e-06 54.7 43 60.5
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 5.1e-06 54.7 107 38.3
Nn4g23363 Nelumbo nucifera HOM05D007541 ORTHO05D009404 5.1e-06 54.7 32 75.0
ATR0681G007 Amborella trichopoda HOM05D005816 ORTHO05D006915 6.6e-06 54.3 32 78.1
PSO017G0024 Papaver somniferum HOM05D005816 ORTHO05D006915 6.6e-06 54.3 25 92.0
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 8.6e-06 53.9 118 33.9


User provided reference genes

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