Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.9e-53 212.2 105 100.0
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 1.0e-11 73.6 77 50.6
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 1.4e-11 73.2 77 49.4
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 1.4e-11 73.2 77 50.6
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.3e-11 72.4 101 41.6
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 4.0e-11 71.6 80 46.2
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 5.2e-11 71.2 77 50.6
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 5.2e-11 71.2 77 50.6
Medtr4g112890 Medicago truncatula HOM05D019240 ORTHO05D002245 8.8e-11 70.5 73 49.3
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 2.0e-10 69.3 77 49.4
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 2.0e-10 69.3 77 49.4
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 2.0e-10 69.3 77 49.4
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.6e-10 68.9 77 49.4
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.6e-10 68.9 77 49.4
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 3.4e-10 68.6 105 40.0
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 5.7e-10 67.8 75 48.0
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 7.5e-10 67.4 77 48.1
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 1.3e-09 66.6 84 48.8
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 1.3e-09 66.6 84 48.8
Ca_21744_v3 Cicer arietinum L. HOM05D019240 ORTHO05D002245 1.3e-09 66.6 61 55.7
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 2.2e-09 65.9 79 48.1
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 2.8e-09 65.5 75 49.3
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.8e-09 65.5 77 46.8
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.9e-09 64.7 80 46.2
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 8.3e-09 63.9 78 43.6
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 1.1e-08 63.5 75 48.0
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.1e-08 63.5 76 47.4
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 1.4e-08 63.2 79 45.6
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.8e-08 62.8 63 50.8
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.8e-08 62.8 63 50.8
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.4e-08 62.4 80 45.0
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 2.4e-08 62.4 67 50.7
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.4e-08 62.4 81 44.4
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 3.1e-08 62.0 77 42.9
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 3.1e-08 62.0 81 44.4
Glyma.17G082900 Glycine max HOM05D019240 ORTHO05D031589 4.1e-08 61.6 61 54.1
Phvul.003G181200 Phaseolus vulgaris HOM05D019240 ORTHO05D002245 5.4e-08 61.2 60 50.0
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 5.4e-08 61.2 67 49.3
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 5.4e-08 61.2 77 44.2
AL4G27570 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 7.0e-08 60.8 78 46.2
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 7.0e-08 60.8 88 40.9
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 7.0e-08 60.8 65 49.2
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 7.0e-08 60.8 76 47.4
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 9.2e-08 60.5 77 42.9
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 9.2e-08 60.5 77 42.9
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 9.2e-08 60.5 64 48.4
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 1.6e-07 59.7 78 46.2
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 1.6e-07 59.7 76 47.4
Glyma.05G017100 Glycine max HOM05D019240 ORTHO05D002245 2.0e-07 59.3 72 44.4
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 3.5e-07 58.5 61 49.2
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 3.5e-07 58.5 61 49.2
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 3.5e-07 58.5 76 46.1
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-07 58.5 76 46.1
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-07 58.5 76 46.1
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-07 58.5 76 46.1
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 3.5e-07 58.5 80 41.2
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 4.5e-07 58.2 69 46.4
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 4.5e-07 58.2 64 48.4
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 5.9e-07 57.8 64 46.9
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 5.9e-07 57.8 74 41.9
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 5.9e-07 57.8 77 41.6
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 7.7e-07 57.4 65 49.2
CiPaw.15G117700 Carya illinoinensis HOM05D019240 ORTHO05D002245 1.3e-06 56.6 28 78.6
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.3e-06 56.6 74 41.9
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.3e-06 56.6 113 38.1
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 1.3e-06 56.6 78 42.3
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 1.3e-06 56.6 63 47.6
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.7e-06 56.2 62 45.2
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.7e-06 56.2 66 47.0
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 1.7e-06 56.2 74 44.6
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.7e-06 56.2 57 50.9
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 2.3e-06 55.8 79 44.3
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.3e-06 55.8 62 45.2
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 2.3e-06 55.8 83 37.3
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 2.3e-06 55.8 87 37.9
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 2.3e-06 55.8 63 52.4
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.9e-06 55.5 70 45.7
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.9e-06 55.5 58 55.2
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 2.9e-06 55.5 74 45.9
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 2.9e-06 55.5 72 43.1
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 2.9e-06 55.5 77 45.5
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 2.9e-06 55.5 64 46.9
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 2.9e-06 55.5 75 42.7
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.8e-06 55.1 70 47.1
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 3.8e-06 55.1 69 44.9
Dinv05962 Davidia involucrata HOM05D014462 ORTHO05D018947 3.8e-06 55.1 59 47.5
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 3.8e-06 55.1 70 44.3
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 5.0e-06 54.7 68 42.6
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.0e-06 54.7 64 46.9
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 5.0e-06 54.7 64 46.9
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 5.0e-06 54.7 73 39.7
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 5.0e-06 54.7 74 39.2
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 6.6e-06 54.3 75 42.7
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 6.6e-06 54.3 58 48.3
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 6.6e-06 54.3 64 46.9
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 6.6e-06 54.3 72 40.3
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 8.6e-06 53.9 85 38.8
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 8.6e-06 53.9 65 47.7
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 8.6e-06 53.9 65 47.7
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 8.6e-06 53.9 85 37.6
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 8.6e-06 53.9 56 50.0
HanXRQChr01g0017681 Helianthus annuus HOM05D002385 ORTHO05D002245 8.6e-06 53.9 61 50.8
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 8.6e-06 53.9 82 41.5


User provided reference genes

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