Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 3.6e-70 268.1 131 100.0
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 2.1e-49 199.1 152 69.1
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 1.3e-35 153.3 142 58.5
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 3.4e-20 102.1 142 40.8
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 4.5e-20 101.7 129 45.7
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 3.2e-18 95.5 155 38.1
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 2.1e-17 92.8 127 43.3
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 7.9e-17 90.9 144 39.6
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.0e-16 90.5 145 37.2
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.0e-16 90.5 145 37.2
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 5.1e-16 88.2 131 42.0
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.5e-15 86.7 129 41.1
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 1.5e-15 86.7 138 40.6
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 2.1e-14 82.8 146 38.4
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 8.2e-14 80.9 126 38.9
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.1e-13 80.5 142 36.6
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 4.1e-13 78.6 132 39.4
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 5.3e-13 78.2 132 37.9
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 9.0e-13 77.4 137 38.0
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 9.0e-13 77.4 128 42.2
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.2e-12 77.0 134 39.6
Potri.001G371800 Populus trichocarpa HOM05D005932 ORTHO05D006213 1.5e-12 76.6 114 43.9
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 2.6e-12 75.9 128 38.3
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 3.4e-12 75.5 139 36.7
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 3.4e-12 75.5 145 35.9
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 3.4e-12 75.5 117 38.5
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 4.5e-12 75.1 135 36.3
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 1.0e-11 73.9 155 34.2
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 1.0e-11 73.9 112 44.6
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 2.2e-11 72.8 132 37.1
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 2.2e-11 72.8 112 40.2
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 2.2e-11 72.8 142 33.8
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 2.2e-11 72.8 128 35.9
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 2.9e-11 72.4 124 33.1
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 2.9e-11 72.4 125 37.6
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 3.8e-11 72.0 130 36.2
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 3.8e-11 72.0 140 36.4
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 3.8e-11 72.0 111 39.6
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 6.5e-11 71.2 125 40.8
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 6.5e-11 71.2 133 37.6
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 6.5e-11 71.2 127 37.8
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 6.5e-11 71.2 116 42.2
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 1.1e-10 70.5 123 36.6
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 1.1e-10 70.5 133 34.6
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 1.4e-10 70.1 128 39.8
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 1.4e-10 70.1 123 36.6
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 1.4e-10 70.1 129 38.0
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.9e-10 69.7 112 39.3
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 2.5e-10 69.3 134 33.6
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 2.5e-10 69.3 113 42.5
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 3.2e-10 68.9 112 39.3
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 5.5e-10 68.2 124 33.9
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 5.5e-10 68.2 120 34.2
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 7.2e-10 67.8 123 34.1
TPR.G26337 Trifolium pratense HOM05D005932 ORTHO05D006213 7.2e-10 67.8 113 38.9
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 9.3e-10 67.4 111 37.8
CsaV3_6G052360 Cucumis sativus L. HOM05D005932 ORTHO05D006213 1.6e-09 66.6 117 35.9
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 1.6e-09 66.6 123 36.6
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 2.1e-09 66.2 120 35.0
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 2.1e-09 66.2 120 35.0
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 2.1e-09 66.2 120 35.0
Cfa000817 Carpinus fangiana HOM05D005932 ORTHO05D006213 2.7e-09 65.9 128 36.7
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 2.7e-09 65.9 105 41.9
Medtr2g030220 Medicago truncatula HOM05D005932 ORTHO05D006213 2.7e-09 65.9 122 41.0
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 3.5e-09 65.5 112 41.1
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 4.6e-09 65.1 127 36.2
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 4.6e-09 65.1 125 34.4
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 4.6e-09 65.1 115 35.7
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 4.6e-09 65.1 123 32.5
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 6.1e-09 64.7 118 34.7
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 6.1e-09 64.7 123 34.1
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 6.1e-09 64.7 123 34.1
Carub.0007s1967 Capsella rubella HOM05D005932 ORTHO05D006213 7.9e-09 64.3 121 35.5
Haze_05823 Corylus avellana HOM05D005932 ORTHO05D006213 7.9e-09 64.3 136 35.3
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 1.3e-08 63.5 112 37.5
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 1.8e-08 63.2 108 41.7
Dinv04757 Davidia involucrata HOM05D005932 ORTHO05D006213 1.8e-08 63.2 108 36.1
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 2.3e-08 62.8 112 37.5
ECA238G1329 Erigeron canadensis HOM05D005932 ORTHO05D006213 2.3e-08 62.8 115 38.3
Lalb_Chr18g0057981 Lupinus albus HOM05D005932 ORTHO05D006213 2.3e-08 62.8 128 32.0
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 3.0e-08 62.4 121 33.9
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 3.0e-08 62.4 107 34.6
Aa31LG6G3710 Aethionema arabicum HOM05D005932 ORTHO05D006213 3.9e-08 62.0 126 34.1
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 5.1e-08 61.6 122 36.1
Lj1P1161T30 Lonicera japonica HOM05D005932 ORTHO05D006213 6.7e-08 61.2 103 39.8
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 6.7e-08 61.2 136 31.6
THA.LOC104798624 Tarenaya hassleriana HOM05D012212 ORTHO05D006213 6.7e-08 61.2 128 32.8
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 8.7e-08 60.8 122 32.0
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 8.7e-08 60.8 132 34.1
TWI63G1224 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 8.7e-08 60.8 111 37.8
Thhalv10026499m.g Eutrema salsugineum HOM05D005932 ORTHO05D006213 1.1e-07 60.5 137 32.8
Lj6g0008899 Lotus japonicus HOM05D005932 ORTHO05D006213 1.5e-07 60.1 108 36.1
FAN16G0402 Fragaria x ananassa HOM05D005932 ORTHO05D006213 2.5e-07 59.3 136 34.6
Psat1g167520 Pisum sativum HOM05D005932 ORTHO05D006213 3.3e-07 58.9 124 33.1
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 5.7e-07 58.2 114 38.6
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 5.7e-07 58.2 124 36.3
Thhalv10009012m.g Eutrema salsugineum HOM05D012212 ORTHO05D006213 9.7e-07 57.4 131 30.5
THA.LOC104806292 Tarenaya hassleriana HOM05D001059 ORTHO05D000873 2.2e-06 56.2 125 34.4
MBI18_g11291_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 3.7e-06 55.5 109 34.9
A01p13050 Brassica napus HOM05D005932 ORTHO05D006213 4.8e-06 55.1 111 34.2
BraA01t01247Z Brassica rapa HOM05D005932 ORTHO05D006213 4.8e-06 55.1 111 34.2
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 4.8e-06 55.1 111 31.5
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 4.8e-06 55.1 104 35.6
Aa31LG6G11760 Aethionema arabicum HOM05D012212 ORTHO05D006213 6.3e-06 54.7 138 31.2
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 6.3e-06 54.7 126 31.7
AL7G31630 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 8.2e-06 54.3 133 30.8
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 8.2e-06 54.3 117 33.3


User provided reference genes

Program Settings