Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 6.4e-171 604.0 303 100.0
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 9.1e-109 397.5 321 67.0
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 1.6e-105 386.7 258 75.6
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.0e-104 384.0 267 72.3
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.2e-103 380.6 309 65.4
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 2.6e-103 379.4 269 72.5
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.7e-102 376.7 255 75.3
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 1.8e-101 373.2 261 72.4
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 3.1e-101 372.5 259 72.6
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.6e-100 370.2 309 63.8
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 7.7e-100 367.9 255 73.3
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 1.7e-99 366.7 257 72.0
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 3.8e-99 365.5 257 70.0
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 2.1e-97 359.8 254 72.0
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 4.7e-97 358.6 254 70.9
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 6.1e-97 358.2 403 54.3
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 1.0e-96 357.5 264 67.4
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.0e-96 357.5 279 65.9
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.0e-96 357.5 266 67.3
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.4e-96 357.1 271 67.2
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-96 356.7 263 68.8
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 2.3e-96 356.3 258 69.4
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 2.3e-96 356.3 260 69.2
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 5.2e-96 355.1 264 67.4
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 6.8e-96 354.8 287 64.1
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.5e-95 353.6 258 68.6
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 3.4e-95 352.4 252 71.4
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.4e-95 352.1 259 69.5
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.5e-95 351.3 262 68.7
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.3e-94 350.5 263 66.5
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 2.2e-94 349.7 262 66.8
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 4.9e-94 348.6 262 67.2
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 6.3e-94 348.2 312 59.9
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 6.3e-94 348.2 278 65.1
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 8.3e-94 347.8 258 67.8
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.0e-92 343.2 260 66.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 2.7e-92 342.8 259 67.2
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 3.5e-92 342.4 296 61.1
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 4.5e-92 342.0 259 64.5
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 4.5e-92 342.0 291 60.8
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.3e-91 340.5 260 66.2
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 2.9e-91 339.3 340 54.1
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 3.8e-91 339.0 299 59.5
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 6.6e-91 338.2 340 54.1
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 6.6e-91 338.2 261 66.3
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 8.6e-91 337.8 264 66.7
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 2.5e-90 336.3 282 62.8
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 5.6e-90 335.1 223 73.5
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.8e-89 332.8 253 64.8
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 2.8e-89 332.8 255 65.9
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 8.0e-89 331.3 255 65.1
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 1.0e-88 330.9 297 58.6
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 1.4e-88 330.5 314 56.4
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.8e-88 330.1 263 64.3
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 3.0e-88 329.3 331 54.1
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 5.2e-88 328.6 256 64.8
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.2e-87 327.4 269 62.1
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 2.0e-87 326.6 260 62.7
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 2.6e-87 326.2 231 68.4
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.4e-87 325.9 220 70.9
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 4.4e-87 325.5 260 65.0
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 7.5e-87 324.7 223 71.3
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 2.2e-86 323.2 312 56.4
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.7e-86 322.4 321 56.4
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 6.4e-86 321.6 228 68.0
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.1e-85 320.9 258 60.9
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.8e-85 320.1 223 72.6
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 4.1e-85 318.9 221 69.2
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.6e-84 317.0 299 57.5
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 3.5e-84 315.8 270 61.1
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.0e-83 314.3 254 59.8
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 8.6e-83 311.2 260 63.5
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 8.6e-83 311.2 259 61.4
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.5e-82 310.5 218 70.2
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.6e-81 305.8 259 60.6
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 8.0e-81 304.7 261 58.6
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.3e-80 303.1 257 60.3
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 3.1e-80 302.8 307 54.7
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 1.2e-79 300.8 259 58.3
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.5e-79 300.4 255 60.0
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.0e-79 300.1 254 58.7
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.9e-78 296.2 285 54.0
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 4.9e-78 295.4 258 58.1
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 6.4e-78 295.0 296 54.1
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 8.3e-78 294.7 255 58.0
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-77 294.3 259 59.5
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-77 294.3 257 57.6
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-77 294.3 254 57.9
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.1e-77 294.3 257 58.0
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.9e-77 293.5 296 55.1
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 2.4e-77 293.1 256 57.0
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.2e-76 290.8 254 57.5
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.6e-76 290.4 280 53.2
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.6e-76 290.4 257 57.6
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 4.6e-76 288.9 255 57.3
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.6e-76 288.9 257 56.4
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 6.0e-76 288.5 309 50.5
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 6.0e-76 288.5 257 58.0
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.3e-75 287.3 257 56.4
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.0e-75 286.2 341 48.1
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 3.9e-75 285.8 311 50.2
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 3.9e-75 285.8 311 50.2
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.9e-75 285.8 262 59.2
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 8.6e-75 284.6 270 53.3
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-74 284.3 261 55.2
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.5e-74 283.9 291 51.2
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.9e-74 283.5 253 57.7
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 1.9e-74 283.5 324 48.1
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 2.5e-74 283.1 261 55.2
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 2.5e-74 283.1 247 57.5
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 7.3e-74 281.6 285 51.9
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.6e-73 279.3 222 63.1
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 1.1e-72 277.7 266 54.5
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 5.2e-72 275.4 256 53.9
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-70 270.0 230 58.3
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.7e-70 269.2 225 56.9
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 7.8e-68 261.5 196 67.3
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 9.5e-66 254.6 200 64.0
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 2.8e-65 253.1 222 57.7
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.4e-64 250.8 232 57.3
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 1.8e-64 250.4 192 64.6
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 3.4e-63 246.1 258 51.9
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 3.4e-63 246.1 164 72.6
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 4.4e-63 245.7 301 47.2
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 1.4e-61 240.7 256 51.6
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 2.1e-60 236.9 217 57.1
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.0e-59 234.6 214 56.1
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 3.3e-58 229.6 208 56.7
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 7.3e-58 228.4 208 56.7
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.2e-57 227.6 208 57.2
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 1.2e-57 227.6 208 55.8
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 8.1e-57 224.9 201 58.2
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 1.1e-56 224.6 208 56.7
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 1.8e-56 223.8 290 44.1
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.8e-56 223.8 215 54.9
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.8e-56 223.8 217 55.8
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.2e-56 222.2 198 58.1
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 8.7e-51 204.9 155 65.2
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.1e-50 204.5 227 49.8
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 3.3e-50 203.0 167 65.9
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.8e-49 199.9 203 48.3
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.0e-47 193.7 137 68.6
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.4e-45 187.6 236 47.5
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 9.3e-45 184.9 146 65.1
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 3.3e-42 176.4 140 62.1
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-41 174.5 167 53.9
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 2.0e-39 167.2 126 62.7
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.7e-38 164.1 127 68.5
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 2.9e-38 163.3 131 64.9
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 2.1e-36 157.1 146 58.9
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 6.0e-36 155.6 258 41.9
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 2.5e-34 150.2 120 65.8
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 3.3e-34 149.8 117 62.4
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.6e-33 147.5 268 36.2
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 4.0e-32 142.9 235 35.7
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 5.3e-32 142.5 141 55.3
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 6.9e-32 142.1 136 51.5
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.8e-27 127.5 83 73.5
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 5.1e-27 125.9 169 41.4
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.1e-26 124.8 200 39.5
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.4e-26 122.1 76 75.0
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 2.4e-24 117.1 252 33.3
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 3.2e-21 106.7 101 52.5
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 1.1e-18 98.2 84 53.6
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 2.5e-18 97.1 84 60.7
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.8e-16 90.9 93 52.7
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 9.4e-13 78.6 178 34.3
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.9e-11 73.2 189 28.6
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 1.1e-10 71.6 137 34.3
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 1.5e-10 71.2 102 42.2
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 4.8e-09 66.2 169 30.8
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 6.3e-09 65.9 181 31.5
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 1.8e-08 64.3 77 49.4
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 9.1e-08 62.0 51 58.8


User provided reference genes

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