Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 1.4e-44 182.6 95 100.0
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 1.7e-29 132.5 95 76.8
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 2.8e-24 115.2 95 65.3
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.1e-23 113.2 95 64.2
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 2.4e-23 112.1 95 62.1
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 3.1e-23 111.7 93 64.5
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 7.0e-23 110.5 95 62.1
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.0e-22 109.0 95 60.0
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 1.7e-21 105.9 95 60.0
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.5e-20 102.1 93 61.3
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.5e-20 102.1 93 61.3
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 5.5e-20 100.9 95 53.7
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 1.6e-19 99.4 97 58.8
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 2.1e-19 99.0 95 56.8
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 3.6e-19 98.2 96 58.3
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 2.6e-17 92.0 93 51.6
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 3.4e-17 91.7 98 56.1
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 2.8e-16 88.6 96 55.2
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 6.3e-16 87.4 96 55.2
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.4e-15 86.3 97 51.5
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.8e-15 85.9 97 51.5
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 3.1e-15 85.1 95 53.7
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 3.1e-15 85.1 95 53.7
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 4.1e-15 84.7 93 49.5
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 5.4e-15 84.3 96 49.0
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 9.1e-15 83.6 89 55.1
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 9.1e-15 83.6 88 56.8
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-14 83.2 95 52.6
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 1.2e-14 83.2 104 47.1
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 2.0e-14 82.4 94 52.1
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 2.7e-14 82.0 97 54.6
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.7e-14 82.0 97 50.5
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 1.0e-13 80.1 92 44.6
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.0e-13 80.1 89 50.6
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 1.7e-13 79.3 95 45.3
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.1e-12 76.6 88 51.1
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 5.5e-12 74.3 93 45.2
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 1.2e-11 73.2 98 46.9
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 1.6e-11 72.8 89 48.3
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 6.1e-11 70.9 96 44.8
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.1e-11 70.9 95 44.2
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.0e-10 70.1 95 44.2
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 1.4e-10 69.7 84 52.4
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 1.4e-10 69.7 91 45.1
BraA02t06659Z Brassica rapa HOM05D009494 ORTHO05D011604 2.3e-10 68.9 110 37.3
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.3e-10 68.9 96 45.8
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 2.3e-10 68.9 91 45.1
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 3.0e-10 68.6 108 44.4
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 3.0e-10 68.6 85 49.4
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 4.0e-10 68.2 96 44.8
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.2e-10 67.8 96 45.8
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 6.8e-10 67.4 94 46.8
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 8.8e-10 67.0 90 45.6
A02p15990 Brassica napus HOM05D009494 ORTHO05D011604 1.2e-09 66.6 116 34.5
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.2e-09 66.6 96 44.8
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 1.5e-09 66.2 89 47.2
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 1.5e-09 66.2 89 44.9
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 1.5e-09 66.2 96 39.6
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.0e-09 65.9 89 46.1
BraA07t30782Z Brassica rapa HOM05D009494 ORTHO05D011604 2.6e-09 65.5 118 36.4
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 2.6e-09 65.5 90 47.8
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.6e-09 65.5 95 42.1
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 2.6e-09 65.5 94 43.6
A07p31500 Brassica napus HOM05D009494 ORTHO05D011604 3.4e-09 65.1 115 36.5
BcaC08g45881 Brassica carinata HOM05D009494 ORTHO05D011604 5.7e-09 64.3 118 35.6
C06p36810 Brassica napus HOM05D009494 ORTHO05D011604 5.7e-09 64.3 118 35.6
BolC6t38790H Brassica oleracea HOM05D009494 ORTHO05D011604 5.7e-09 64.3 118 35.6
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 5.7e-09 64.3 87 44.8
Carub.0002s1626 Capsella rubella HOM05D009494 ORTHO05D011604 7.5e-09 63.9 117 33.3
CARHR062540 Cardamine hirsuta HOM05D009494 ORTHO05D011604 7.5e-09 63.9 114 36.8
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 7.5e-09 63.9 96 45.8
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 9.8e-09 63.5 88 46.6
BcaB03g15485 Brassica carinata HOM05D009494 ORTHO05D011604 1.3e-08 63.2 117 35.0
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 1.3e-08 63.2 82 45.1
Thhalv10019320m.g Eutrema salsugineum HOM05D009494 ORTHO05D011604 1.7e-08 62.8 118 37.3
Sp5g24710 Schrenkiella parvula HOM05D009494 ORTHO05D011604 1.7e-08 62.8 112 35.7
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 2.2e-08 62.4 89 44.9
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 2.2e-08 62.4 95 44.2
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 2.2e-08 62.4 117 34.2
BcaC03g15096 Brassica carinata HOM05D009494 ORTHO05D011604 2.8e-08 62.0 116 32.8
C02p26570 Brassica napus HOM05D009494 ORTHO05D011604 2.8e-08 62.0 116 32.8
BolC2t08728H Brassica oleracea HOM05D009494 ORTHO05D011604 2.8e-08 62.0 116 32.8
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 2.8e-08 62.0 95 46.3
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 3.7e-08 61.6 88 44.3
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 3.7e-08 61.6 94 43.6
BcaB05g24463 Brassica carinata HOM05D009494 ORTHO05D011604 4.9e-08 61.2 75 41.3
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 4.9e-08 61.2 79 53.2
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 6.3e-08 60.8 90 44.4
Phvul.002G085300 Phaseolus vulgaris HOM05D015099 ORTHO05D008288 6.3e-08 60.8 110 41.8
AT1G69588 Arabidopsis thaliana HOM05D009494 ORTHO05D011604 8.3e-08 60.5 117 31.6
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.1e-07 60.1 90 43.3
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 1.1e-07 60.1 78 46.2
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 1.1e-07 60.1 94 44.7
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 1.4e-07 59.7 90 40.0
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.4e-07 59.7 90 43.3
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 3.1e-07 58.5 89 44.9
Aa31LG4G11160 Aethionema arabicum HOM05D009494 ORTHO05D011604 4.1e-07 58.2 121 35.5
PGSC0003DMG400018456 Solanum tuberosum HOM05D007096 ORTHO05D008288 5.4e-07 57.8 102 42.2
VMungo1215G2026 Vigna mungo HOM05D015099 ORTHO05D008288 5.4e-07 57.8 105 36.2
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 7.0e-07 57.4 88 43.2
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 9.2e-07 57.0 92 38.0
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 9.2e-07 57.0 92 39.1
Ah.03g135070 Amaranthus hybridus HOM05D007096 ORTHO05D008288 2.0e-06 55.8 72 45.8
Migut.E00089 Erythranthe guttata HOM05D007096 ORTHO05D008288 3.5e-06 55.1 99 37.4
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 3.5e-06 55.1 98 40.8
Glyma.01G047800 Glycine max HOM05D015099 ORTHO05D008288 3.5e-06 55.1 108 39.8
unitig_8.g3197 Utricularia gibba HOM05D007096 ORTHO05D008288 3.5e-06 55.1 86 34.9
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 4.5e-06 54.7 88 42.0
Os08g0438701 Oryza sativa ssp. japonica HOM05D007096 ORTHO05D008288 4.5e-06 54.7 94 40.4
Lsat_1_v5_gn_8_52521 Lactuca sativa HOM05D007096 ORTHO05D008288 5.9e-06 54.3 71 40.8
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 5.9e-06 54.3 85 43.5
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 5.9e-06 54.3 90 40.0
Solyc05g007650.1 Solanum lycopersicum HOM05D007096 ORTHO05D008288 7.8e-06 53.9 101 42.6


User provided reference genes

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