Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 5.1e-83 311.2 179 100.0
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 6.0e-60 234.6 188 79.8
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 2.6e-39 166.0 190 67.4
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 2.9e-38 162.5 187 68.4
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 5.0e-38 161.8 193 63.7
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.1e-36 156.4 195 65.1
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 4.7e-36 155.2 189 63.0
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 6.1e-36 154.8 203 60.1
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.8e-35 153.3 181 66.3
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 3.9e-35 152.1 185 55.1
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.1e-34 150.6 193 51.3
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.5e-34 150.2 182 53.8
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 4.4e-34 148.7 184 53.3
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 1.7e-33 146.7 179 53.1
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.8e-33 146.0 184 52.7
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.1e-32 144.1 183 51.9
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.4e-32 143.7 192 53.6
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 7.0e-32 141.4 179 59.8
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 7.0e-32 141.4 188 50.5
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 7.0e-32 141.4 188 50.5
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 1.5e-31 140.2 190 52.1
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.0e-30 137.5 177 59.3
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 8.5e-30 134.4 182 51.1
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 3.2e-29 132.5 184 49.5
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 4.2e-29 132.1 190 52.1
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 4.2e-29 132.1 199 51.8
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 5.5e-29 131.7 177 54.8
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 7.2e-29 131.3 178 50.0
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 1.4e-27 127.1 184 55.4
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 3.9e-27 125.6 149 66.4
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 3.9e-27 125.6 192 51.6
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 6.7e-27 124.8 180 48.9
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 8.8e-27 124.4 175 48.0
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.5e-26 123.6 188 46.8
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.0e-26 123.2 191 52.4
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 4.4e-26 122.1 175 51.4
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 6.3e-25 118.2 189 56.6
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 3.1e-24 115.9 185 51.4
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 4.1e-24 115.5 179 49.7
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 7.0e-24 114.8 179 45.8
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.6e-23 113.6 176 47.2
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.0e-22 110.9 147 49.0
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.3e-22 110.5 193 46.1
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 2.2e-22 109.8 182 46.2
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.5e-21 107.1 199 46.2
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-21 107.1 193 46.1
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 1.5e-21 107.1 193 46.1
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 1.5e-21 107.1 187 47.6
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.5e-21 107.1 188 45.7
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.9e-21 106.7 191 42.9
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.9e-21 106.7 193 47.7
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 1.9e-21 106.7 180 43.9
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 4.2e-21 105.5 192 47.9
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 1.2e-20 104.0 181 50.8
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.6e-20 103.6 193 48.7
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 6.1e-20 101.7 190 48.4
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 6.1e-20 101.7 190 48.4
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 6.1e-20 101.7 140 61.4
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.4e-19 100.5 139 60.4
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-19 99.8 190 45.8
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-19 99.8 190 45.8
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 4.0e-19 99.0 194 40.7
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 5.2e-19 98.6 178 44.9
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 8.8e-19 97.8 186 43.0
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 8.8e-19 97.8 184 50.5
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 1.2e-18 97.4 209 41.1
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 1.2e-18 97.4 186 39.8
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 2.0e-18 96.7 155 47.7
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.6e-18 96.3 198 39.9
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.6e-18 96.3 191 42.9
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 4.4e-18 95.5 193 42.0
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 4.4e-18 95.5 184 50.0
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 4.4e-18 95.5 179 39.1
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 7.5e-18 94.7 189 43.4
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 9.8e-18 94.4 190 45.8
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 9.8e-18 94.4 195 48.7
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 1.3e-17 94.0 190 42.6
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 1.7e-17 93.6 183 41.0
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 2.2e-17 93.2 196 39.3
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 2.2e-17 93.2 192 46.4
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.2e-17 93.2 191 42.4
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 2.8e-17 92.8 180 46.7
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 3.7e-17 92.4 193 41.5
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 6.3e-17 91.7 192 40.6
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 8.3e-17 91.3 193 41.5
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 8.3e-17 91.3 193 41.5
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 8.3e-17 91.3 192 47.9
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-16 90.9 193 41.5
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 1.1e-16 90.9 193 41.5
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 1.1e-16 90.9 195 50.3
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.4e-16 90.5 186 49.5
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-16 90.5 192 42.2
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 1.4e-16 90.5 192 42.2
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 1.4e-16 90.5 188 40.4
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 2.4e-16 89.7 187 41.7
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.4e-16 89.7 155 54.2
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 3.1e-16 89.4 180 51.1
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 3.1e-16 89.4 143 44.8
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 3.1e-16 89.4 183 39.9
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 3.1e-16 89.4 160 51.9
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 5.4e-16 88.6 195 41.0
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 5.4e-16 88.6 195 41.0
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 5.4e-16 88.6 195 41.0
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.2e-15 87.4 184 48.4
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 2.7e-15 86.3 169 46.7
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 3.5e-15 85.9 185 40.5
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 4.5e-15 85.5 201 37.8
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 4.5e-15 85.5 192 39.6
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 4.5e-15 85.5 157 51.0
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 4.5e-15 85.5 191 40.3
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 5.9e-15 85.1 154 46.1
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 1.0e-14 84.3 176 42.6
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 1.0e-14 84.3 191 39.8
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 1.7e-14 83.6 164 50.0
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 2.2e-14 83.2 82 59.8
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 2.9e-14 82.8 78 59.0
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 3.8e-14 82.4 184 39.7
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 5.0e-14 82.0 198 36.4
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 6.5e-14 81.6 133 46.6
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.1e-13 80.9 177 41.8
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.9e-13 80.1 133 54.9
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.9e-13 80.1 134 46.3
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.2e-13 79.3 77 62.3
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 3.2e-13 79.3 192 40.1
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 3.2e-13 79.3 192 40.1
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 3.2e-13 79.3 192 40.1
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 3.2e-13 79.3 192 40.1
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.2e-12 77.4 188 46.8
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 4.7e-12 75.5 186 40.3
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.8e-11 73.6 129 38.8
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 1.8e-11 73.6 188 38.3
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.8e-11 73.6 163 35.0
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.0e-11 72.8 183 36.6
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.2e-10 70.9 179 36.3
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 2.6e-10 69.7 75 56.0
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 3.4e-10 69.3 180 43.3
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 4.4e-10 68.9 75 52.0
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 5.7e-10 68.6 186 37.1
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.3e-09 67.4 181 32.0
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 6.3e-09 65.1 170 41.8
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 1.8e-08 63.5 141 38.3
unitig_747.g21176 Utricularia gibba HOM05D005097 ORTHO05D006186 4.1e-08 62.4 177 36.7
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 1.6e-07 60.5 76 56.6


User provided reference genes

Program Settings