Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 3.7e-312 1074.7 548 100.0
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 3.5e-260 901.4 507 89.7
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 4.5e-191 671.8 532 65.2
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 1.9e-189 666.4 504 68.1
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 2.3e-187 659.4 508 66.7
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 4.0e-187 658.7 518 68.9
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 1.5e-186 656.8 518 67.4
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 2.0e-186 656.4 510 66.9
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 4.4e-186 655.2 514 68.1
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 1.2e-183 647.1 508 67.5
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 1.7e-177 626.7 507 63.1
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 2.8e-177 625.9 513 62.4
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.7e-175 619.4 508 61.4
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 5.0e-174 615.1 466 68.5
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 1.1e-173 614.0 518 63.7
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 4.3e-173 612.1 508 60.8
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 4.7e-172 608.6 508 60.4
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 4.4e-170 602.1 394 76.4
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 1.9e-168 596.7 507 61.1
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 2.7e-167 592.8 500 61.8
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.6e-167 592.0 484 61.6
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 6.6e-166 588.2 470 65.3
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 3.3e-165 585.9 501 61.1
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 4.3e-165 585.5 497 60.8
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 4.3e-165 585.5 479 63.9
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 6.2e-164 581.6 510 60.2
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.8e-163 580.1 467 62.1
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.8e-163 580.1 499 60.7
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 3.1e-163 579.3 461 63.8
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 5.2e-163 578.6 461 62.7
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 8.9e-163 577.8 508 61.0
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 8.9e-163 577.8 461 62.7
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 8.9e-163 577.8 478 62.6
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.2e-162 577.4 467 61.7
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.2e-162 577.4 506 58.7
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 1.2e-162 577.4 479 62.2
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 3.4e-162 575.9 466 63.3
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 7.5e-162 574.7 445 64.9
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 1.3e-161 573.9 498 61.0
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 1.7e-161 573.5 502 59.0
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 2.9e-161 572.8 498 60.0
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 2.9e-161 572.8 490 61.0
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 4.9e-161 572.0 508 57.9
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 4.9e-161 572.0 474 62.4
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 7.1e-160 568.2 504 60.7
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.7e-158 563.5 400 68.0
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 3.9e-158 562.4 475 62.5
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 8.6e-158 561.2 476 60.9
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 1.9e-157 560.1 511 58.1
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.9e-157 560.1 400 67.5
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 1.9e-157 560.1 476 60.7
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 5.6e-157 558.5 513 57.5
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 5.6e-157 558.5 468 61.3
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 2.8e-156 556.2 498 59.6
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 6.2e-156 555.1 477 61.6
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 3.1e-155 552.7 468 60.7
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 3.4e-154 549.3 486 59.1
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 4.4e-154 548.9 476 60.5
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.7e-153 547.0 468 60.7
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 2.9e-153 546.2 484 59.1
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 3.7e-153 545.8 498 57.4
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 6.4e-153 545.0 472 59.1
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.1e-152 544.3 467 61.7
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 1.4e-152 543.9 516 56.0
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 1.9e-152 543.5 481 59.5
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 2.4e-152 543.1 474 60.3
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 5.4e-152 542.0 471 60.7
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 7.1e-152 541.6 397 67.8
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 2.8e-148 529.6 477 58.3
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 1.2e-146 524.2 455 59.8
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.3e-145 520.8 449 59.2
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.1e-144 517.7 353 73.1
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 1.9e-144 516.9 461 59.7
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 1.9e-144 516.9 389 64.0
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 3.2e-144 516.2 466 56.2
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 3.2e-144 516.2 510 55.7
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 7.1e-144 515.0 527 53.5
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 1.3e-142 510.8 476 56.9
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 1.9e-141 506.9 504 56.0
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 3.3e-141 506.1 468 56.6
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 5.6e-141 505.4 475 57.7
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 3.6e-140 502.7 470 58.5
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 1.4e-139 500.7 478 56.7
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 4.0e-139 499.2 505 57.2
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 4.0e-139 499.2 475 57.3
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 5.3e-139 498.8 478 56.9
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 1.1e-136 491.1 479 56.6
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 2.4e-136 490.0 486 56.0
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 3.2e-136 489.6 473 56.4
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 1.6e-135 487.3 492 55.3
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 3.5e-135 486.1 480 56.0
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 6.6e-134 481.9 456 60.3
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 8.4e-129 464.9 341 68.3
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 8.4e-121 438.3 499 49.3
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 3.2e-120 436.4 390 56.4
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 3.5e-111 406.4 488 46.9
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 7.9e-111 405.2 482 47.3
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 5.7e-109 399.1 435 52.2
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 2.8e-108 396.7 321 63.2
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 2.4e-107 393.7 399 51.6
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.4e-102 377.9 414 48.6
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 1.8e-102 377.5 400 49.8
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 2.3e-94 350.5 328 58.2
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.1e-83 315.1 219 68.0
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.5e-72 278.1 341 48.7
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.2e-71 275.0 192 66.7
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 4.0e-70 270.0 417 38.8
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 2.3e-57 227.6 183 62.8
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 1.3e-44 185.3 214 47.7
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.8e-37 159.8 187 48.1
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 4.9e-36 156.8 320 33.8
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 7.6e-29 132.9 106 58.5
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 1.3e-28 132.1 119 58.0
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 9.9e-21 105.9 88 61.4
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 8.7e-17 92.8 238 29.0
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 1.6e-15 88.6 299 22.7
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.5e-13 82.0 112 51.8
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 4.6e-10 70.5 95 46.3
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 7.9e-10 69.7 154 30.5
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 8.7e-09 66.2 120 27.5
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 5.6e-08 63.5 141 27.0
Aqoxy1G01011 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 9.6e-08 62.8 103 30.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 2.8e-07 61.2 109 29.4
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 3.7e-07 60.8 124 27.4
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 3.7e-07 60.8 124 25.8
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 3.7e-07 60.8 124 27.4
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.8e-07 60.5 226 22.6
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 6.2e-07 60.1 124 27.4
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 6.2e-07 60.1 163 27.0
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 6.2e-07 60.1 133 24.1
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 8.1e-07 59.7 134 23.9
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 2.4e-06 58.2 153 25.5
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 2.4e-06 58.2 153 25.5
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 2.4e-06 58.2 164 25.6
Ah.06g194670 Amaranthus hybridus HOM05D006596 ORTHO05D008497 3.1e-06 57.8 130 29.2
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.1e-06 57.8 158 24.1
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.1e-06 57.8 158 24.1
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 3.1e-06 57.8 158 24.1
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 3.1e-06 57.8 158 26.6
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 3.1e-06 57.8 158 26.6
FAN26G2355 Fragaria x ananassa HOM05D006258 ORTHO05D007961 4.0e-06 57.4 153 25.5
Prupe.5G207600 Prunus persica HOM05D005362 ORTHO05D006895 4.0e-06 57.4 311 23.2
MD15G1148600 Malus domestica HOM05D006258 ORTHO05D007961 5.3e-06 57.0 167 24.0
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 5.3e-06 57.0 152 27.0
Prupe.7G266300 Prunus persica HOM05D006258 ORTHO05D007961 6.9e-06 56.6 167 23.4
Zm00001eb414570 Zea mays HOM05D006258 ORTHO05D007961 6.9e-06 56.6 216 21.3
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 9.0e-06 56.2 151 25.8


User provided reference genes

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