Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 3.4e-155 552.7 605 100.0
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 1.4e-95 354.8 607 83.5
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 2.3e-87 327.4 621 79.1
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 1.1e-86 325.1 645 67.9
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 4.8e-85 319.7 610 80.2
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 7.0e-84 315.8 616 81.0
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 7.7e-83 312.4 606 80.2
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 1.0e-82 312.0 612 80.9
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 1.0e-82 312.0 612 79.1
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 3.2e-81 307.0 622 78.8
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 1.2e-80 305.1 620 79.0
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 2.8e-77 293.9 609 79.8
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 6.3e-77 292.7 561 83.1
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 8.2e-77 292.4 609 79.6
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 8.2e-77 292.4 608 78.6
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 8.2e-77 292.4 608 78.6
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 2.7e-75 287.3 562 82.4
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 3.8e-74 283.5 613 78.8
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 1.9e-73 281.2 611 78.6
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 4.7e-72 276.6 617 75.4
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 1.0e-71 275.4 582 79.9
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 1.0e-71 275.4 618 75.9
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 8.8e-71 272.3 605 76.4
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 2.6e-70 270.8 618 75.7
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 3.4e-70 270.4 610 73.6
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 3.4e-70 270.4 611 77.3
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 5.7e-70 269.6 610 73.6
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 2.2e-69 267.7 616 75.3
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 2.8e-69 267.3 622 75.1
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 4.8e-69 266.5 617 74.9
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 2.4e-68 264.2 610 58.5
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 7.0e-68 262.7 607 74.6
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 4.5e-67 260.0 607 75.5
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 2.3e-66 257.7 565 78.9
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 8.6e-66 255.8 621 65.1
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 1.5e-65 255.0 606 73.3
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 2.5e-65 254.2 606 75.6
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 5.5e-65 253.1 612 75.7
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 9.5e-65 252.3 623 75.3
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 9.5e-65 252.3 618 67.3
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 1.4e-63 248.4 604 75.8
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 1.4e-63 248.4 557 82.0
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 4.0e-63 246.9 608 70.6
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 8.9e-63 245.7 556 78.4
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 1.2e-62 245.4 609 73.7
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 1.2e-62 245.4 622 74.1
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 1.5e-62 245.0 573 78.7
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.7e-61 241.5 614 75.2
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 2.8e-61 240.7 547 81.9
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 8.3e-61 239.2 556 80.4
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 1.4e-60 238.4 558 80.1
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 7.0e-60 236.1 608 74.5
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 9.2e-60 235.7 537 80.4
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 1.6e-59 235.0 555 79.8
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 1.6e-59 235.0 609 75.4
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 2.3e-58 231.1 602 75.2
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 3.8e-58 230.3 561 78.1
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 5.0e-58 229.9 632 69.3
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 3.3e-57 227.3 595 75.1
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 3.3e-57 227.3 231 56.3
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 3.3e-57 227.3 561 78.4
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 5.6e-57 226.5 562 76.3
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 9.5e-57 225.7 401 71.6
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 1.6e-56 224.9 236 56.4
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 2.1e-56 224.6 562 76.2
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 4.7e-56 223.4 632 72.0
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 4.0e-55 220.3 547 79.2
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 5.2e-55 219.9 547 79.5
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 5.2e-55 219.9 583 75.5
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 6.8e-55 219.5 552 79.3
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 8.9e-55 219.2 583 75.6
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 3.4e-54 217.2 547 79.0
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 4.4e-54 216.9 558 78.9
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 4.4e-54 216.9 558 78.9
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 4.4e-54 216.9 666 69.5
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 4.9e-53 213.4 547 79.2
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 4.9e-53 213.4 547 79.3
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 4.9e-53 213.4 547 79.3
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 3.2e-52 210.7 168 64.3
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 5.4e-52 209.9 226 54.4
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 7.0e-52 209.5 179 59.8
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 1.2e-51 208.8 168 64.3
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 1.6e-51 208.4 260 52.3
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 2.7e-51 207.6 546 67.0
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 4.6e-51 206.8 177 62.7
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 6.0e-51 206.5 239 51.5
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 1.3e-50 205.3 228 50.4
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 2.3e-50 204.5 575 75.7
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 3.9e-50 203.8 245 51.0
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 5.0e-50 203.4 471 89.6
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 8.6e-50 202.6 176 60.8
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 3.3e-49 200.7 239 51.0
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 4.3e-49 200.3 610 72.0
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 7.3e-49 199.5 171 59.6
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 3.6e-48 197.2 213 54.5
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 3.1e-47 194.1 215 53.5
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 3.4e-46 190.7 215 53.0
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 3.4e-46 190.7 567 75.8
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 3.7e-45 187.2 549 74.3
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.7e-42 178.3 597 58.0
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 1.7e-42 178.3 503 79.7
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 3.0e-42 177.6 488 82.6
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 3.6e-40 170.6 210 49.5
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 6.2e-40 169.9 181 54.7
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 6.2e-40 169.9 181 54.7
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 1.3e-37 162.2 575 72.5
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 6.4e-37 159.8 121 65.3
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.7e-34 151.8 539 71.1
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 2.3e-34 151.4 122 62.3
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 1.5e-33 148.7 551 72.8
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 2.8e-32 144.4 175 48.0
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 1.6e-27 128.6 245 38.4
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.4e-23 115.5 240 87.1
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 1.7e-21 108.6 560 69.5
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 3.0e-18 97.8 177 37.9
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 6.6e-18 96.7 213 37.1
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 9.6e-17 92.8 360 62.8
SEGI_34898 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 5.8e-14 83.6 228 82.0
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 9.9e-14 82.8 226 87.2
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 2.2e-13 81.6 58 67.2
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 4.9e-13 80.5 610 62.8
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 4.9e-13 80.5 610 62.8
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 1.6e-11 75.5 460 78.0
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 2.7e-11 74.7 148 36.5
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 3.3e-09 67.8 242 76.9
RcHm_v2.0_Chr6g0258861 Rosa chinensis HOM05D046827 ORTHO05D007107 7.6e-06 56.6 46 65.2


User provided reference genes

Program Settings