Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G088700 Manihot esculenta HOM05D008443 ORTHO05D010587 2.6e-36 154.8 77 100.0
Manes.01G198240 Manihot esculenta HOM05D008443 ORTHO05D010587 1.4e-26 122.5 75 82.7
QL03p061920 Quercus lobata HOM05D008443 ORTHO05D010587 1.4e-21 105.9 73 74.0
Gorai.005G184100 Gossypium raimondii HOM05D008443 ORTHO05D010587 1.0e-19 99.8 83 61.4
Gohir.A03G141200 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.2e-19 98.6 78 65.4
CSS0001689 Camellia sinensis var. sinensis HOM05D008443 ORTHO05D010587 2.9e-19 98.2 83 65.1
Duzib268G1406 Durio zibethinus HOM05D008443 ORTHO05D010587 8.5e-19 96.7 75 69.3
Gohir.A05G318400 Gossypium hirsutum HOM05D008443 ORTHO05D010587 1.4e-18 95.9 79 63.3
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 2.5e-18 95.1 63 77.8
CiPaw.05G147800 Carya illinoinensis HOM05D008443 ORTHO05D010587 5.5e-18 94.0 71 73.2
Gohir.D02G164100 Gossypium hirsutum HOM05D008443 ORTHO05D010587 7.2e-18 93.6 78 62.8
ClCG05G025160 Citrullus lanatus HOM05D008443 ORTHO05D010587 1.6e-17 92.4 78 65.4
Gohir.D05G320600 Gossypium hirsutum HOM05D008443 ORTHO05D010587 7.9e-17 90.1 82 57.3
Phvul.003G053700 Phaseolus vulgaris HOM05D008443 ORTHO05D010587 1.8e-16 89.0 70 61.4
Aqoxy3G03049 Aquilegia oxysepala HOM05D008443 ORTHO05D010587 2.3e-16 88.6 60 71.7
Glyma.08G289300 Glycine max HOM05D008443 ORTHO05D010587 2.3e-16 88.6 70 62.9
Gorai.009G343700 Gossypium raimondii HOM05D008443 ORTHO05D010587 2.3e-16 88.6 83 55.4
CsaV3_5G031740 Cucumis sativus L. HOM05D008443 ORTHO05D010587 5.1e-16 87.4 75 62.7
CANSAT01G1518 Cannabis sativa HOM05D008443 ORTHO05D010587 6.7e-16 87.0 67 71.6
MELO3C012013.2 Cucumis melo HOM05D008443 ORTHO05D010587 1.5e-15 85.9 73 64.4
Glyma.18G135000 Glycine max HOM05D008443 ORTHO05D010587 1.5e-15 85.9 70 62.9
MBI15_g19742_MAGBIO Magnolia biondii HOM05D008443 ORTHO05D010587 1.9e-15 85.5 59 72.9
TWI36G1347 Tripterygium wilfordii HOM05D008443 ORTHO05D010587 4.3e-15 84.3 68 63.2
VMungo0251G0489 Vigna mungo HOM05D008443 ORTHO05D010587 4.3e-15 84.3 72 59.7
Eucgr.B03356 Eucalyptus grandis HOM05D008443 ORTHO05D010587 9.7e-15 83.2 49 81.6
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 9.7e-15 83.2 70 62.9
TAR629G3213 Trochodendron aralioides HOM05D008443 ORTHO05D010587 1.3e-14 82.8 72 59.7
Lalb_Chr16g0382381 Lupinus albus HOM05D008443 ORTHO05D010587 8.2e-14 80.1 70 54.3
PGR102G0936 Punica granatum HOM05D008443 ORTHO05D010587 1.4e-13 79.3 65 64.6
Rhsim12G0048000 Rhododendron simsii HOM05D008443 ORTHO05D010587 1.8e-13 79.0 74 59.5
MD16G1089300 Malus domestica HOM05D008443 ORTHO05D010587 5.3e-13 77.4 56 71.4
Prupe.1G256700 Prunus persica HOM05D008443 ORTHO05D010587 5.3e-13 77.4 55 70.9
Haze_07480 Corylus avellana HOM05D008443 ORTHO05D010587 4.5e-12 74.3 81 48.1
MD13G1089100 Malus domestica HOM05D008443 ORTHO05D010587 1.7e-11 72.4 51 72.5
ATR1149G093 Amborella trichopoda HOM05D008443 ORTHO05D010587 2.2e-11 72.0 53 58.5
Dinv31086 Davidia involucrata HOM05D000086 ORTHO05D000983 2.2e-11 72.0 63 60.3
FAN17G0561 Fragaria x ananassa HOM05D008443 ORTHO05D010587 2.9e-11 71.6 49 69.4
FAN22G1825 Fragaria x ananassa HOM05D008443 ORTHO05D010587 2.9e-11 71.6 49 69.4
Lj2g0011197 Lotus japonicus HOM05D008443 ORTHO05D010587 2.9e-11 71.6 78 48.7
Cfa019086 Carpinus fangiana HOM05D008443 ORTHO05D010587 5.0e-11 70.9 82 45.1
Sc11g0001310 Simmondsia chinensis HOM05D008443 ORTHO05D010587 5.0e-11 70.9 71 54.9
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 8.5e-11 70.1 74 52.7
RcHm_v2.0_Chr4g0444191 Rosa chinensis HOM05D008443 ORTHO05D010587 8.5e-11 70.1 49 69.4
MSTRG.2385 Avicennia marina HOM05D008443 ORTHO05D010587 1.4e-10 69.3 67 56.7
Medtr8g063410 Medicago truncatula HOM05D008443 ORTHO05D010587 2.5e-10 68.6 69 52.2
CDE07G0196 Ceratophyllum demersum HOM05D008443 ORTHO05D010587 1.6e-09 65.9 48 64.6
Dinv24885 Davidia involucrata HOM05D000086 ORTHO05D000983 2.7e-09 65.1 48 64.6
AUR62013990 Chenopodium quinoa HOM05D008443 ORTHO05D010587 3.6e-09 64.7 67 58.2
Aa31LG7G7790 Aethionema arabicum HOM05D009339 ORTHO05D011480 5.1e-08 60.8 53 56.6
HPP92_010558 Vanilla planifolia HOM05D008443 ORTHO05D010587 6.7e-08 60.5 48 58.3
COL.COLO4_24771 Corchorus olitorius HOM05D008443 ORTHO05D010587 8.8e-08 60.1 63 55.6
SEGI_04815 Sequoiadendron giganteum HOM05D008443 ORTHO05D010587 3.3e-07 58.2 46 58.7
AT1G23995 Arabidopsis thaliana HOM05D009339 ORTHO05D011480 5.7e-07 57.4 62 50.0
DCAR_031087 Daucus carota HOM05D008443 ORTHO05D010587 9.7e-07 56.6 59 57.6
AL1G37750 Arabidopsis lyrata HOM05D009339 ORTHO05D011480 2.2e-06 55.5 49 57.1
AT1G23965 Arabidopsis thaliana HOM05D009339 ORTHO05D011480 2.2e-06 55.5 62 46.8
Nn2g12547 Nelumbo nucifera HOM05D011714 ORTHO05D011286 3.7e-06 54.7 71 46.5
Sed0013077 Sechium edule HOM05D033138 ORTHO05D010587 4.8e-06 54.3 59 49.2
Thecc.03G007600 Theobroma cacao HOM05D008443 ORTHO05D010587 6.3e-06 53.9 62 50.0


User provided reference genes

Program Settings