Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 2.0e-159 565.8 319 100.0
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 6.0e-127 458.0 320 77.2
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 3.9e-126 455.3 319 75.5
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 6.6e-126 454.5 309 78.6
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 8.1e-124 447.6 304 78.3
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.1e-123 447.2 304 78.3
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 4.0e-123 445.3 300 83.3
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.5e-122 443.4 304 78.0
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 7.6e-122 441.0 320 78.8
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 4.2e-120 435.3 305 80.7
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 9.3e-120 434.1 320 74.1
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 2.7e-119 432.6 323 74.0
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.0e-118 430.6 301 80.4
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.7e-118 429.9 302 81.5
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 2.3e-118 429.5 318 78.6
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 3.0e-118 429.1 323 73.1
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 3.9e-118 428.7 307 78.8
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.1e-117 427.2 320 72.2
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.9e-117 426.4 304 74.3
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 3.3e-117 425.6 310 73.5
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 4.3e-117 425.2 299 76.6
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 4.3e-117 425.2 301 75.7
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 7.3e-117 424.5 298 76.2
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 7.3e-117 424.5 307 80.8
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 9.6e-117 424.1 314 73.6
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.6e-116 423.3 301 76.4
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 2.8e-116 422.5 306 75.2
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 1.1e-115 420.6 320 70.9
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 1.1e-115 420.6 317 71.6
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 4.0e-115 418.7 301 76.1
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 4.0e-115 418.7 301 76.1
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 9.0e-115 417.5 313 74.8
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 4.4e-114 415.2 301 78.1
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 5.8e-114 414.8 299 77.9
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 5.8e-114 414.8 317 77.0
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.3e-113 413.7 300 78.0
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.3e-113 413.7 302 73.2
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.7e-113 413.3 322 77.0
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 1.7e-113 413.3 320 70.0
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 2.2e-113 412.9 322 77.3
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.2e-113 412.9 298 75.5
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 2.2e-113 412.9 320 69.7
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 3.8e-113 412.1 304 74.0
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 3.8e-113 412.1 302 72.2
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 4.9e-113 411.8 300 78.3
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 6.4e-113 411.4 314 74.8
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 1.1e-112 410.6 321 77.3
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 1.1e-112 410.6 304 72.4
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 2.4e-112 409.5 311 76.5
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 2.4e-112 409.5 301 72.4
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.2e-112 409.1 310 72.3
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 9.3e-112 407.5 317 74.1
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.2e-111 407.1 329 75.4
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 1.2e-111 407.1 319 69.9
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.6e-111 406.8 300 74.3
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.7e-111 406.0 329 75.7
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 3.5e-111 405.6 291 75.6
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 4.6e-111 405.2 294 77.6
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 6.0e-111 404.8 314 70.4
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.3e-110 403.7 308 75.6
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.3e-110 403.7 307 74.9
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 3.0e-110 402.5 306 75.5
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.9e-110 402.1 312 77.6
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 3.9e-110 402.1 303 72.6
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 3.9e-110 402.1 297 71.7
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 5.1e-110 401.7 300 72.3
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 6.6e-110 401.4 303 76.2
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 8.7e-110 401.0 303 72.3
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.9e-109 399.8 306 75.2
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.5e-109 399.4 299 77.3
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 5.6e-109 398.3 314 73.9
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 1.3e-108 397.1 303 71.6
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.6e-108 396.7 306 70.6
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 1.6e-108 396.7 302 73.2
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 2.1e-108 396.4 318 72.6
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 3.6e-108 395.6 314 73.9
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 3.6e-108 395.6 305 70.5
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 3.6e-108 395.6 317 73.5
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 4.8e-108 395.2 306 72.5
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 8.1e-108 394.4 313 74.1
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 8.1e-108 394.4 309 74.8
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 8.1e-108 394.4 313 74.1
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 8.1e-108 394.4 300 74.3
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 2.4e-107 392.9 314 72.3
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 2.4e-107 392.9 312 73.4
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 3.1e-107 392.5 305 69.8
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 3.1e-107 392.5 299 76.9
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 1.2e-106 390.6 317 72.2
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.5e-106 390.2 301 70.8
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 4.5e-106 388.7 307 73.9
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 4.5e-106 388.7 311 70.7
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 7.6e-106 387.9 311 68.5
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.7e-105 386.7 304 70.7
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 9.3e-104 380.9 320 66.9
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.2e-103 380.6 301 74.1
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.2e-103 380.6 313 67.4
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 1.6e-103 380.2 309 72.8
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 2.7e-103 379.4 313 72.8
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.3e-102 377.1 308 66.9
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 6.7e-102 374.8 312 72.8
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 8.7e-102 374.4 308 70.1
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 1.1e-101 374.0 297 72.1
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 1.9e-101 373.2 310 72.3
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 4.3e-101 372.1 302 69.9
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 2.8e-100 369.4 308 70.8
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 3.7e-100 369.0 309 72.2
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 3.7e-100 369.0 317 69.7
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 4.5e-98 362.1 304 72.0
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 8.4e-97 357.8 296 66.9
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 2.7e-95 352.8 301 64.8
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 5.1e-94 348.6 312 63.1
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 1.1e-93 347.4 241 75.5
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 7.4e-93 344.7 294 65.0
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 1.7e-89 333.6 316 59.8
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 4.6e-87 325.5 243 72.4
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.9e-81 306.2 296 62.8
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.1e-80 304.3 304 59.2
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 9.4e-80 301.2 304 57.9
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 6.7e-78 295.0 216 72.7
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 9.7e-69 264.6 215 74.9
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.3e-68 264.2 299 58.2
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.7e-68 262.7 299 58.5
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 9.4e-64 248.1 243 63.4
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 2.7e-63 246.5 303 55.4
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 5.7e-61 238.8 213 63.8
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 4.1e-59 232.6 305 50.5
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 7.2e-56 221.9 296 55.1
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 2.2e-52 210.3 195 60.0
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 5.5e-48 195.7 316 44.6
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 7.5e-45 185.3 320 41.6
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 4.9e-44 182.6 258 47.3
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 2.9e-41 173.3 285 39.6
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.5e-40 171.0 299 44.8
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 4.0e-38 162.9 126 67.5
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 3.4e-37 159.8 129 64.3
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 5.7e-37 159.1 126 66.7
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 2.6e-29 133.7 205 41.0
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 5.8e-29 132.5 90 75.6
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 6.4e-28 129.0 301 34.2
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 2.5e-24 117.1 128 53.9
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 3.3e-24 116.7 93 66.7
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 4.7e-23 112.8 210 39.0
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 2.2e-20 104.0 181 41.4
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 2.2e-20 104.0 181 41.4
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 2.2e-20 104.0 181 41.4
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 6.4e-20 102.4 175 45.1
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 8.3e-20 102.1 169 40.8
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 1.4e-19 101.3 63 82.5
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.9e-19 100.9 73 74.0
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 6.6e-17 92.4 60 78.3
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 6.2e-15 85.9 76 56.6
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.8e-14 84.3 71 64.8
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 6.8e-14 82.4 71 62.0
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 4.4e-13 79.7 82 59.8
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 1.4e-11 74.7 112 42.9
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.5e-08 63.9 100 46.0
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 5.6e-08 62.8 40 75.0
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.4e-06 57.4 59 57.6


User provided reference genes

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