Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G086372 Manihot esculenta HOM05D001004 ORTHO05D000653 2.6e-25 117.9 56 100.0
Manes.05G086318 Manihot esculenta HOM05D001004 ORTHO05D000653 4.9e-24 113.6 55 96.4
Potri.002G042300 Populus trichocarpa HOM05D001004 ORTHO05D000653 5.0e-13 77.0 55 58.2
Migut.D00400 Erythranthe guttata HOM05D001004 ORTHO05D000653 1.5e-12 75.5 55 56.4
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 9.5e-12 72.8 51 60.8
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 9.5e-12 72.8 51 60.8
PSO339G3429 Papaver somniferum HOM05D001004 ORTHO05D000653 1.6e-11 72.0 56 58.9
Manes.05G086322 Manihot esculenta HOM05D001004 ORTHO05D000653 2.1e-11 71.6 50 64.0
Gohir.A11G128400 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.8e-11 71.2 51 58.8
A04p14760 Brassica napus HOM05D001004 ORTHO05D000653 3.6e-11 70.9 55 52.7
Migut.D00398 Erythranthe guttata HOM05D001004 ORTHO05D000653 1.4e-10 68.9 51 54.9
AUR62011910 Chenopodium quinoa HOM05D001004 ORTHO05D000653 1.8e-10 68.6 56 58.9
BcaB01g03622 Brassica carinata HOM05D001004 ORTHO05D000653 2.3e-10 68.2 53 56.6
MBI04_g22607_MAGBIO Magnolia biondii HOM05D001004 ORTHO05D000653 2.3e-10 68.2 55 54.5
Atru.chr5.1613 Acer truncatum HOM05D001004 ORTHO05D000653 3.1e-10 67.8 51 54.9
Sp4g21250 Schrenkiella parvula HOM05D001004 ORTHO05D000653 4.0e-10 67.4 53 54.7
PSO339G6102 Papaver somniferum HOM05D001004 ORTHO05D000653 5.2e-10 67.0 55 52.7
Carub.0004s2089 Capsella rubella HOM05D001004 ORTHO05D000653 6.8e-10 66.6 53 54.7
Migut.D00399 Erythranthe guttata HOM05D001004 ORTHO05D000653 6.8e-10 66.6 55 52.7
Manes.05G086324 Manihot esculenta HOM05D001004 ORTHO05D000653 6.8e-10 66.6 51 60.8
COL.COLO4_05579 Corchorus olitorius HOM05D001004 ORTHO05D000653 8.9e-10 66.2 49 57.1
PSO384G3535 Papaver somniferum HOM05D001004 ORTHO05D000653 8.9e-10 66.2 55 52.7
AL4G36170 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 1.5e-09 65.5 53 52.8
AUR62032226 Chenopodium quinoa HOM05D001004 ORTHO05D000653 1.5e-09 65.5 51 56.9
Lj5g0018869 Lotus japonicus HOM05D001004 ORTHO05D000653 1.5e-09 65.5 55 49.1
Thhalv10017502m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 2.0e-09 65.1 53 54.7
Manes.05G086328 Manihot esculenta HOM05D001004 ORTHO05D000653 2.0e-09 65.1 51 54.9
Manes.05G086355 Manihot esculenta HOM05D001004 ORTHO05D000653 2.0e-09 65.1 57 54.4
Migut.N02177 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.4e-09 64.3 51 49.0
Manes.05G086337 Manihot esculenta HOM05D001004 ORTHO05D000653 3.4e-09 64.3 55 54.5
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 3.4e-09 64.3 48 58.3
CARHR133600 Cardamine hirsuta HOM05D001004 ORTHO05D000653 5.8e-09 63.5 55 50.9
AUR62011909 Chenopodium quinoa HOM05D001004 ORTHO05D000653 7.5e-09 63.2 56 51.8
AUR62032224 Chenopodium quinoa HOM05D001004 ORTHO05D000653 7.5e-09 63.2 56 51.8
ClCG05G004540 Citrullus lanatus HOM05D001004 ORTHO05D000653 7.5e-09 63.2 55 49.1
PSO566G0151 Papaver somniferum HOM05D001004 ORTHO05D000653 9.8e-09 62.8 56 51.8
CiPaw.04G183700 Carya illinoinensis HOM05D001004 ORTHO05D000653 1.3e-08 62.4 57 50.9
CsaV3_3G012540 Cucumis sativus L. HOM05D001004 ORTHO05D000653 1.3e-08 62.4 55 47.3
MD13G1208300 Malus domestica HOM05D001004 ORTHO05D000653 1.7e-08 62.0 55 47.3
BcaC02g07440 Brassica carinata HOM05D001004 ORTHO05D000653 2.2e-08 61.6 53 50.9
C03p25690 Brassica napus HOM05D001004 ORTHO05D000653 2.2e-08 61.6 46 60.9
Ciclev10006203m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.2e-08 61.6 53 56.6
Ciclev10006211m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.2e-08 61.6 53 56.6
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.2e-08 61.6 53 54.7
MELO3C006465.2 Cucumis melo HOM05D001004 ORTHO05D000653 2.2e-08 61.6 55 49.1
Sed0010846 Sechium edule HOM05D001004 ORTHO05D000653 2.2e-08 61.6 51 51.0
ECA238G0152 Erigeron canadensis HOM05D001004 ORTHO05D000653 2.9e-08 61.2 51 49.0
Migut.N02024 Erythranthe guttata HOM05D001004 ORTHO05D000653 2.9e-08 61.2 51 49.0
Manes.05G086336 Manihot esculenta HOM05D001004 ORTHO05D000653 2.9e-08 61.2 58 55.2
Manes.05G086394 Manihot esculenta HOM05D001004 ORTHO05D000653 2.9e-08 61.2 58 55.2
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 2.9e-08 61.2 50 60.0
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 3.7e-08 60.8 52 53.8
HanXRQChr01g0005421 Helianthus annuus HOM05D001004 ORTHO05D000653 3.7e-08 60.8 51 49.0
HanXRQChr01g0005431 Helianthus annuus HOM05D001004 ORTHO05D000653 3.7e-08 60.8 51 49.0
HanXRQChr01g0007401 Helianthus annuus HOM05D001004 ORTHO05D000653 3.7e-08 60.8 51 49.0
Hma1.2p1_0310F.1_g120850 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 4.9e-08 60.5 55 47.3
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 4.9e-08 60.5 56 51.8
TWI18G1440 Tripterygium wilfordii HOM05D001004 ORTHO05D000653 4.9e-08 60.5 50 54.0
EL10Ac5g10439 Beta vulgaris HOM05D001004 ORTHO05D000653 6.4e-08 60.1 53 52.8
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 6.4e-08 60.1 49 57.1
Carub.0004s2090 Capsella rubella HOM05D001004 ORTHO05D000653 6.4e-08 60.1 46 56.5
DCAR_011992 Daucus carota HOM05D001004 ORTHO05D000653 6.4e-08 60.1 55 50.9
HanXRQChr01g0014521 Helianthus annuus HOM05D001004 ORTHO05D000653 6.4e-08 60.1 55 47.3
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 6.4e-08 60.1 55 47.3
arahy.Tifrunner.gnm1.ann1.M1DDN9 Arachis hypogaea HOM05D001004 ORTHO05D000653 8.3e-08 59.7 55 47.3
Psat4g107840 Pisum sativum HOM05D001004 ORTHO05D000653 8.3e-08 59.7 53 52.8
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 1.1e-07 59.3 50 58.0
Manes.05G086444 Manihot esculenta HOM05D001004 ORTHO05D000653 1.1e-07 59.3 56 57.1
Potri.009G028300 Populus trichocarpa HOM05D001004 ORTHO05D000653 1.1e-07 59.3 55 43.6
Sabra03G0145200 Salix brachista HOM05D001004 ORTHO05D000653 1.1e-07 59.3 55 43.6
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 1.1e-07 59.3 53 49.1
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 1.4e-07 58.9 57 45.6
Lj5g0009601 Lotus japonicus HOM05D001004 ORTHO05D000653 1.4e-07 58.9 51 49.0
QL06p015886 Quercus lobata HOM05D001004 ORTHO05D000653 1.4e-07 58.9 55 45.5
Sed0011759 Sechium edule HOM05D001004 ORTHO05D000653 1.4e-07 58.9 55 47.3
THA.LOC104824172 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 1.4e-07 58.9 53 50.9
HanXRQChr01g0014571 Helianthus annuus HOM05D001004 ORTHO05D000653 1.9e-07 58.5 50 60.0
QL06p015876 Quercus lobata HOM05D001004 ORTHO05D000653 1.9e-07 58.5 51 49.0
DCAR_011991 Daucus carota HOM05D001004 ORTHO05D000653 2.4e-07 58.2 55 47.3
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.4e-07 58.2 52 51.9
THA.LOC109117082 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 2.4e-07 58.2 49 51.0
A04p29640 Brassica napus HOM05D001004 ORTHO05D000653 3.2e-07 57.8 46 54.3
BraA04t18430Z Brassica rapa HOM05D001004 ORTHO05D000653 3.2e-07 57.8 46 54.3
Cfa002172 Carpinus fangiana HOM05D001004 ORTHO05D000653 3.2e-07 57.8 49 53.1
CsaV3_3G012530 Cucumis sativus L. HOM05D001004 ORTHO05D000653 3.2e-07 57.8 55 45.5
Manes.05G086392 Manihot esculenta HOM05D001004 ORTHO05D000653 3.2e-07 57.8 48 56.2
arahy.Tifrunner.gnm1.ann1.AUM5GA Arachis hypogaea HOM05D001004 ORTHO05D000653 4.1e-07 57.4 55 47.3
C04p66930 Brassica napus HOM05D001004 ORTHO05D000653 4.1e-07 57.4 46 54.3
BolC4t28194H Brassica oleracea HOM05D001004 ORTHO05D000653 4.1e-07 57.4 46 54.3
MELO3C006462.2 Cucumis melo HOM05D001004 ORTHO05D000653 4.1e-07 57.4 55 45.5
Migut.A00978 Erythranthe guttata HOM05D001004 ORTHO05D000653 4.1e-07 57.4 55 45.5
Potri.010G075300 Populus trichocarpa HOM05D001004 ORTHO05D000653 4.1e-07 57.4 55 41.8
Potri.010G075501 Populus trichocarpa HOM05D001004 ORTHO05D000653 4.1e-07 57.4 55 41.8
EL10Ac8g18696 Beta vulgaris HOM05D001004 ORTHO05D000653 5.4e-07 57.0 56 46.4
BcaC02g08941 Brassica carinata HOM05D001004 ORTHO05D000653 5.4e-07 57.0 48 47.9
BolC4t26457H Brassica oleracea HOM05D001004 ORTHO05D000653 5.4e-07 57.0 48 47.9
ClCG05G004560 Citrullus lanatus HOM05D001004 ORTHO05D000653 5.4e-07 57.0 51 51.0
Migut.A00975 Erythranthe guttata HOM05D001004 ORTHO05D000653 5.4e-07 57.0 55 45.5
HanXRQChr01g0014551 Helianthus annuus HOM05D001004 ORTHO05D000653 5.4e-07 57.0 48 50.0
Lalb_Chr21g0312251 Lupinus albus HOM05D001004 ORTHO05D000653 5.4e-07 57.0 51 51.0
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 5.4e-07 57.0 55 43.6
Sabra10G0033100 Salix brachista HOM05D001004 ORTHO05D000653 5.4e-07 57.0 55 41.8
Sabra10G0033300 Salix brachista HOM05D001004 ORTHO05D000653 5.4e-07 57.0 55 41.8
Sabra10G0033500 Salix brachista HOM05D001004 ORTHO05D000653 5.4e-07 57.0 55 41.8
HanXRQChr01g0005211 Helianthus annuus HOM05D001004 ORTHO05D000653 7.0e-07 56.6 48 47.9
Hma1.2p1_0650F.1_g195520 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 7.0e-07 56.6 53 49.1
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 7.0e-07 56.6 51 47.1
BcaB07g30343 Brassica carinata HOM05D001004 ORTHO05D000653 9.2e-07 56.2 59 45.8
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 9.2e-07 56.2 49 49.0
ECA248G1252 Erigeron canadensis HOM05D001004 ORTHO05D000653 9.2e-07 56.2 51 45.1
HanXRQChr01g0014511 Helianthus annuus HOM05D001004 ORTHO05D000653 9.2e-07 56.2 57 43.9
TPR.G9059 Trifolium pratense HOM05D001004 ORTHO05D000653 9.2e-07 56.2 51 49.0
vmacro02638 Vaccinium macrocarpon HOM05D001004 ORTHO05D000653 9.2e-07 56.2 53 49.1
MELO3C006464.2 Cucumis melo HOM05D001004 ORTHO05D000653 1.2e-06 55.8 55 43.6
DCAR_011990 Daucus carota HOM05D001004 ORTHO05D000653 1.2e-06 55.8 48 43.8
Glyma.20G205900 Glycine max HOM05D001004 ORTHO05D000653 1.2e-06 55.8 53 47.2
Lalb_Chr21g0312271 Lupinus albus HOM05D001004 ORTHO05D000653 1.2e-06 55.8 51 47.1
MD05G1203000 Malus domestica HOM05D001004 ORTHO05D000653 1.2e-06 55.8 51 45.1
Sed0013106 Sechium edule HOM05D001004 ORTHO05D000653 1.2e-06 55.8 55 47.3
COL.COLO4_12160 Corchorus olitorius HOM05D001004 ORTHO05D000653 1.6e-06 55.5 56 50.0
CsaV3_5G013330 Cucumis sativus L. HOM05D001004 ORTHO05D000653 1.6e-06 55.5 57 49.1
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 1.6e-06 55.5 57 42.1
HanXRQChr01g0007331 Helianthus annuus HOM05D001004 ORTHO05D000653 1.6e-06 55.5 48 47.9
Hma1.2p1_0650F.1_g195540 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 1.6e-06 55.5 48 56.2
Manes.04G036766 Manihot esculenta HOM05D001004 ORTHO05D000653 1.6e-06 55.5 56 48.2
Manes.05G086331 Manihot esculenta HOM05D001004 ORTHO05D000653 1.6e-06 55.5 51 52.9
Prupe.8G228900 Prunus persica HOM05D001004 ORTHO05D000653 1.6e-06 55.5 53 49.1
BraA04t18431Z Brassica rapa HOM05D001004 ORTHO05D000653 2.1e-06 55.1 50 50.0
CDE03G0306 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 2.1e-06 55.1 56 46.4
AUR62010425 Chenopodium quinoa HOM05D001004 ORTHO05D000653 2.1e-06 55.1 51 49.0
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.1e-06 55.1 50 48.0
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.1e-06 55.1 50 46.0
DCAR_024231 Daucus carota HOM05D001004 ORTHO05D000653 2.1e-06 55.1 53 41.5
Prupe.1G032000 Prunus persica HOM05D001004 ORTHO05D000653 2.1e-06 55.1 57 43.9
arahy.Tifrunner.gnm1.ann1.T5EZBY Arachis hypogaea HOM05D001004 ORTHO05D000653 2.7e-06 54.7 55 43.6
CsaV3_5G013360 Cucumis sativus L. HOM05D001004 ORTHO05D000653 2.7e-06 54.7 57 52.6
Gorai.007G143700 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.7e-06 54.7 48 52.1
HanXRQChr01g0007271 Helianthus annuus HOM05D001004 ORTHO05D000653 2.7e-06 54.7 51 45.1
CDE03G0139 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 3.5e-06 54.3 56 44.6
AUR62032225 Chenopodium quinoa HOM05D001004 ORTHO05D000653 3.5e-06 54.3 47 53.2
Ciclev10006306m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.5e-06 54.3 55 45.5
Haze_19482 Corylus avellana HOM05D001004 ORTHO05D000653 3.5e-06 54.3 54 42.6
Glyma.13G120600 Glycine max HOM05D001004 ORTHO05D000653 3.5e-06 54.3 52 46.2
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 3.5e-06 54.3 59 45.8
GSVIVG01018141001 Vitis vinifera HOM05D001004 ORTHO05D000653 3.5e-06 54.3 54 50.0
arahy.Tifrunner.gnm1.ann1.KV3BZC Arachis hypogaea HOM05D001004 ORTHO05D000653 4.6e-06 53.9 55 43.6
Migut.A00979 Erythranthe guttata HOM05D001004 ORTHO05D000653 4.6e-06 53.9 51 49.0
Oeu032586.1 Olea europaea HOM05D001004 ORTHO05D000653 4.6e-06 53.9 55 43.6
Cc03_g04970 Coffea canephora HOM05D001004 ORTHO05D000653 6.0e-06 53.5 48 45.8
Haze_11314 Corylus avellana HOM05D001004 ORTHO05D000653 6.0e-06 53.5 54 42.6
Medtr1g075410 Medicago truncatula HOM05D001004 ORTHO05D000653 6.0e-06 53.5 51 45.1
SalBow6G3365 Salvia bowleyana HOM05D001004 ORTHO05D000653 6.0e-06 53.5 55 40.0
SalBow6G5314 Salvia bowleyana HOM05D001004 ORTHO05D000653 6.0e-06 53.5 55 43.6
SGA_v2.0_scaffold103G30002 Striga asiatica HOM05D001004 ORTHO05D000653 6.0e-06 53.5 46 52.2
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 6.0e-06 53.5 53 45.3
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 6.0e-06 53.5 53 45.3
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 6.0e-06 53.5 53 45.3
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 6.0e-06 53.5 53 45.3
TPR.G31259 Trifolium pratense HOM05D001004 ORTHO05D000653 6.0e-06 53.5 51 45.1
Ciclev10023822m.g Citrus clementina HOM05D001004 ORTHO05D000653 7.8e-06 53.1 48 45.8
Glyma.20G205700 Glycine max HOM05D001004 ORTHO05D000653 7.8e-06 53.1 55 41.8
HanXRQChr01g0007301 Helianthus annuus HOM05D001004 ORTHO05D000653 7.8e-06 53.1 56 44.6
HanXRQChr01g0007341 Helianthus annuus HOM05D001004 ORTHO05D000653 7.8e-06 53.1 56 44.6
Medtr1g075340 Medicago truncatula HOM05D001004 ORTHO05D000653 7.8e-06 53.1 55 41.8
Nn3g18474 Nelumbo nucifera HOM05D001004 ORTHO05D000653 7.8e-06 53.1 55 41.8
Prupe.8G229000 Prunus persica HOM05D001004 ORTHO05D000653 7.8e-06 53.1 54 42.6
QL06p015871 Quercus lobata HOM05D001004 ORTHO05D000653 7.8e-06 53.1 51 43.1
RcHm_v2.0_Chr4g0390841 Rosa chinensis HOM05D001004 ORTHO05D000653 7.8e-06 53.1 57 40.4


User provided reference genes

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