Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 2.2e-171 605.5 303 100.0
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 9.1e-133 477.2 309 79.3
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 8.8e-128 460.7 312 73.1
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 1.3e-126 456.8 312 73.1
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 1.7e-123 446.4 312 71.5
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.8e-123 445.3 311 70.7
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 6.5e-123 444.5 314 71.7
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 3.2e-122 442.2 312 71.5
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 4.2e-122 441.8 302 71.9
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 5.5e-122 441.4 312 70.8
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 4.7e-121 438.3 311 71.4
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 6.1e-121 438.0 311 69.8
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 6.1e-121 438.0 313 70.3
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 1.0e-120 437.2 305 71.1
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.0e-120 437.2 311 69.5
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 1.8e-120 436.4 317 69.4
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 8.8e-120 434.1 292 73.3
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 2.0e-119 433.0 312 71.8
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.6e-119 432.6 313 69.0
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 4.8e-118 428.3 254 79.1
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 1.1e-117 427.2 310 68.7
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 2.4e-117 426.0 294 71.8
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 3.1e-117 425.6 310 68.4
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 1.6e-116 423.3 266 75.2
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 4.5e-116 421.8 312 67.6
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 5.9e-116 421.4 266 75.6
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.0e-115 420.6 310 68.7
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 3.8e-115 418.7 232 84.5
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 3.8e-115 418.7 232 84.5
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 8.5e-115 417.5 291 69.4
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 2.5e-114 416.0 306 69.0
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 9.4e-114 414.1 303 68.3
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 2.1e-113 412.9 260 76.5
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 4.7e-113 411.8 306 67.6
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 6.1e-113 411.4 309 66.3
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 8.0e-113 411.0 310 67.7
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.0e-112 410.6 310 67.7
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 1.0e-112 410.6 314 69.4
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 3.0e-112 409.1 309 68.3
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 4.0e-112 408.7 310 67.7
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 8.8e-112 407.5 314 65.0
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.2e-111 407.1 249 76.3
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 1.2e-111 407.1 312 66.0
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 1.2e-111 407.1 320 65.0
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 2.6e-111 406.0 306 67.3
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 2.6e-111 406.0 306 67.3
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 4.4e-111 405.2 264 70.8
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 7.5e-111 404.4 298 68.1
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 1.7e-110 403.3 292 69.2
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 2.2e-110 402.9 266 71.8
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 3.7e-110 402.1 274 71.2
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.8e-109 399.8 263 73.0
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 3.1e-109 399.1 245 75.9
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 3.1e-109 399.1 246 75.2
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 5.3e-109 398.3 309 62.8
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 7.0e-109 397.9 289 68.9
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 7.0e-109 397.9 281 68.7
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 9.1e-109 397.5 232 81.0
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 2.0e-108 396.4 307 65.1
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 2.7e-108 396.0 265 72.1
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 3.5e-108 395.6 315 64.1
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 4.5e-108 395.2 284 66.5
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 1.0e-107 394.0 256 70.3
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-107 393.7 346 61.3
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.3e-107 393.7 346 61.3
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 1.7e-107 393.3 312 66.0
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 1.9e-106 389.8 314 60.2
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 2.5e-106 389.4 295 66.8
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 2.5e-106 389.4 306 66.0
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 3.2e-106 389.0 312 65.1
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 5.5e-106 388.3 308 64.6
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 5.5e-106 388.3 264 71.6
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.4e-104 383.6 307 64.2
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.8e-104 383.3 311 67.5
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 3.0e-104 382.5 336 59.8
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 7.5e-103 377.9 285 70.5
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 2.8e-102 375.9 297 64.0
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 3.7e-102 375.6 230 77.0
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 2.4e-101 372.9 297 63.6
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 5.9e-100 368.2 266 66.2
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 1.1e-98 364.0 259 66.8
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 1.5e-98 363.6 261 66.7
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 4.4e-95 352.1 317 59.9
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 7.5e-95 351.3 249 66.3
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 4.9e-94 348.6 276 61.2
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 6.3e-94 348.2 248 67.3
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 3.1e-93 345.9 320 57.8
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.2e-92 344.0 288 61.5
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 1.2e-92 344.0 257 67.3
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 4.5e-92 342.0 249 66.7
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.9e-91 339.3 312 59.9
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 8.6e-83 311.2 252 60.3
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 4.4e-79 298.9 263 60.1
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 3.5e-76 289.3 244 59.0
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 6.0e-76 288.5 294 53.1
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 1.0e-75 287.7 240 60.0
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 4.0e-72 275.8 254 56.3
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 2.6e-71 273.1 194 66.5
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 8.6e-67 258.1 151 76.8
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 2.8e-65 253.1 216 58.3
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 8.1e-65 251.5 176 71.0
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 5.2e-64 248.8 173 65.9
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 3.4e-55 219.5 173 60.7
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 6.2e-49 198.7 269 40.5
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 1.4e-45 187.6 248 42.7
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 2.3e-43 180.3 246 45.1
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 8.1e-41 171.8 164 61.0
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 5.3e-40 169.1 204 49.5
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 2.9e-38 163.3 183 50.8
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 2.5e-34 150.2 149 51.0
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 5.3e-32 142.5 123 56.9
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 6.9e-32 142.1 99 68.7
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 3.2e-29 133.3 94 70.2
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 5.5e-29 132.5 98 65.3
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 6.3e-25 119.0 119 52.1
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 8.2e-25 118.6 150 40.0
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 1.1e-24 118.2 178 39.3
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 1.8e-24 117.5 119 51.3
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 1.1e-21 108.2 63 77.8
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 1.9e-21 107.5 138 42.8
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 4.2e-21 106.3 143 45.5
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 8.8e-19 98.6 58 77.6
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 1.4e-16 91.3 209 34.4
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 5.0e-14 82.8 116 44.0
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 3.6e-12 76.6 95 46.3
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 7.9e-12 75.5 56 60.7
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 3.9e-11 73.2 159 35.8
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 1.5e-10 71.2 120 37.5
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 9.7e-10 68.6 116 37.1
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 2.2e-09 67.4 61 54.1
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 4.8e-09 66.2 50 68.0
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 7.0e-08 62.4 41 68.3
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 1.2e-07 61.6 56 57.1
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 1.5e-07 61.2 49 61.2
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 1.5e-07 61.2 50 64.0
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 2.0e-07 60.8 50 64.0
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 5.9e-07 59.3 50 62.0


User provided reference genes

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