Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 2.4e-210 735.7 522 100.0
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 2.0e-116 423.7 530 61.3
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 2.7e-108 396.7 529 67.1
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.7e-102 377.5 519 68.2
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 1.5e-98 364.4 533 62.9
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 4.3e-98 362.8 534 63.9
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 2.0e-95 354.0 561 64.2
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 2.0e-95 354.0 539 63.1
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 3.8e-94 349.7 527 66.0
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 8.4e-94 348.6 539 60.7
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 3.9e-91 339.7 525 65.9
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 6.6e-91 339.0 529 64.5
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.1e-90 338.2 551 62.8
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 2.5e-90 337.0 541 61.9
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 3.3e-90 336.7 525 63.6
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 4.3e-90 336.3 530 57.7
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 8.1e-89 332.0 523 64.4
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 1.1e-88 331.6 552 63.2
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 1.8e-88 330.9 525 58.1
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.4e-88 330.5 561 61.3
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 2.4e-88 330.5 525 61.5
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.0e-88 329.7 532 62.2
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 1.2e-87 328.2 522 53.4
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 4.4e-87 326.2 537 62.0
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 7.6e-87 325.5 526 63.7
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.1e-85 321.6 601 58.4
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 1.4e-85 321.2 601 58.4
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 2.4e-85 320.5 530 62.3
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 4.2e-85 319.7 563 43.7
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 3.5e-84 316.6 427 65.8
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 3.5e-84 316.6 551 62.4
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 2.5e-82 310.5 537 62.2
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 9.6e-82 308.5 540 61.5
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 9.6e-82 308.5 553 61.5
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 6.2e-81 305.8 545 59.1
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 5.3e-80 302.8 524 64.7
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 5.3e-80 302.8 545 60.7
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 6.9e-80 302.4 530 61.5
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 4.5e-79 299.7 551 59.5
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 5.8e-79 299.3 543 60.8
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 9.9e-79 298.5 551 60.3
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.9e-78 297.0 546 61.0
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.4e-77 294.7 534 51.7
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 2.4e-77 293.9 542 61.4
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 4.2e-77 293.1 556 58.1
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 7.1e-77 292.4 554 55.8
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 9.3e-77 292.0 552 52.5
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 1.6e-76 291.2 539 55.5
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.5e-76 290.0 540 59.8
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 4.6e-76 289.7 525 60.0
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 4.6e-76 289.7 439 61.5
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 4.6e-76 289.7 553 58.2
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 7.9e-76 288.9 530 59.2
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 6.7e-75 285.8 540 60.4
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 6.7e-75 285.8 549 55.6
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 8.7e-75 285.4 535 58.5
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 1.5e-74 284.6 445 67.6
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.5e-74 283.9 549 53.7
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 5.6e-74 282.7 539 56.4
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.1e-72 276.9 467 56.3
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 5.3e-72 276.2 562 53.7
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 2.0e-71 274.2 218 67.9
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 3.4e-71 273.5 454 62.6
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.4e-71 273.5 544 59.2
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 5.8e-71 272.7 533 56.8
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 2.2e-70 270.8 490 49.8
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 2.9e-70 270.4 169 84.0
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 3.8e-70 270.0 195 75.9
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 4.9e-70 269.6 565 55.2
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 6.5e-70 269.2 526 52.5
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 1.1e-69 268.5 489 57.1
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.2e-69 266.9 470 52.3
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 4.2e-69 266.5 221 67.9
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 4.2e-69 266.5 557 53.9
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 9.3e-69 265.4 192 75.0
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 9.3e-69 265.4 194 74.7
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.6e-68 264.6 185 76.8
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.5e-68 263.5 438 64.8
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.0e-67 261.9 508 55.3
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.0e-67 261.9 176 77.3
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 1.8e-67 261.2 611 49.1
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 2.3e-67 260.8 577 53.6
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 3.0e-67 260.4 453 66.2
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 5.1e-67 259.6 562 53.6
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 6.7e-67 259.2 582 50.3
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.1e-66 258.5 566 54.6
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.5e-66 258.1 579 47.7
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 2.5e-66 257.3 442 63.8
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.3e-65 255.0 535 55.9
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 1.6e-65 254.6 442 53.8
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 1.6e-65 254.6 476 60.9
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 2.8e-65 253.8 440 50.5
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 3.7e-65 253.4 550 52.7
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 4.8e-65 253.1 439 64.9
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 4.8e-65 253.1 442 65.8
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 6.2e-65 252.7 438 66.0
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 6.2e-65 252.7 531 53.7
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 6.2e-65 252.7 539 57.5
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 1.4e-64 251.5 442 65.2
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.4e-64 250.8 241 62.7
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 2.4e-64 250.8 439 61.3
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.5e-63 248.1 185 71.9
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 2.0e-63 247.7 164 77.4
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 2.6e-63 247.3 160 80.6
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 3.4e-63 246.9 523 59.5
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 3.4e-63 246.9 160 80.0
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 1.0e-62 245.4 442 61.8
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.3e-62 245.0 182 70.9
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 2.2e-62 244.2 180 71.7
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 3.8e-62 243.4 178 73.0
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 6.5e-62 242.7 137 88.3
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 6.5e-62 242.7 133 89.5
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 3.2e-61 240.4 172 70.9
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 4.2e-61 240.0 210 64.8
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 5.5e-61 239.6 178 74.2
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-60 238.0 135 86.7
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 3.5e-60 236.9 442 50.2
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 6.1e-60 236.1 133 86.5
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 1.0e-59 235.3 215 64.2
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.3e-59 235.0 187 70.6
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-59 234.6 132 87.1
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 3.0e-59 233.8 439 51.7
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 5.1e-59 233.0 188 69.7
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-58 231.1 130 86.9
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 3.3e-58 230.3 132 85.6
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 7.4e-58 229.2 441 61.9
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 1.6e-57 228.0 438 50.9
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-57 227.6 439 60.8
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 2.8e-57 227.3 129 86.0
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.4e-56 224.9 135 86.7
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-56 224.6 129 85.3
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 2.4e-56 224.2 132 83.3
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 3.1e-56 223.8 169 74.6
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 9.0e-56 222.2 439 59.5
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 7.7e-55 219.2 178 69.7
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 7.7e-55 219.2 178 69.7
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 1.0e-54 218.8 181 65.7
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 2.2e-54 217.6 178 68.0
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 6.5e-54 216.1 184 65.2
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 1.4e-53 214.9 439 39.6
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 1.9e-53 214.5 148 75.0
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.2e-47 195.3 181 60.8
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 2.3e-43 181.0 192 55.7
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 3.3e-42 177.2 395 55.7
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 3.3e-42 177.2 132 71.2
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 5.7e-42 176.4 161 64.6
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 3.5e-39 167.2 139 69.1
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 4.5e-39 166.8 123 70.7
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 5.9e-39 166.4 103 78.6
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 7.7e-39 166.0 161 59.0
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 1.0e-38 165.6 106 79.2
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 6.5e-38 162.9 101 82.2
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 6.1e-36 156.4 93 83.9
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 5.7e-34 149.8 105 70.5
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 4.1e-32 143.7 100 68.0
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 1.2e-31 142.1 84 82.1
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 7.7e-31 139.4 84 81.0
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 2.2e-30 137.9 72 94.4
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 1.6e-28 131.7 103 58.3
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 4.0e-27 127.1 85 72.9
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-26 125.6 85 71.8
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 1.1e-24 119.0 186 43.0
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.6e-23 115.2 458 53.9
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 5.9e-23 113.2 68 80.9
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 2.2e-22 111.3 67 80.6
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 3.8e-22 110.5 65 83.1
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 6.1e-20 103.2 68 76.5
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 6.8e-19 99.8 54 92.6
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 1.2e-18 99.0 163 44.2
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 2.0e-18 98.2 56 89.3
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 1.1e-16 92.4 56 83.9
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 3.5e-15 87.4 202 40.1
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 3.3e-13 80.9 525 39.0
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 8.0e-12 76.3 93 52.7
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 2.0e-10 71.6 91 51.6
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 1.4e-08 65.5 50 68.0
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 1.7e-06 58.5 88 45.5


User provided reference genes

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