Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 3.1e-79 298.9 211 100.0
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 3.2e-36 156.0 209 66.0
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 1.3e-21 107.5 218 38.1
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 2.1e-19 100.1 210 33.8
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 6.1e-19 98.6 212 60.4
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 2.3e-18 96.7 215 43.3
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 8.8e-18 94.7 205 43.9
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.1e-17 94.4 56 60.7
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 2.6e-17 93.2 202 43.1
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 2.6e-17 93.2 58 58.6
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 7.5e-17 91.7 56 60.7
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 9.7e-17 91.3 58 55.2
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 9.7e-17 91.3 59 57.6
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.7e-16 90.5 55 61.8
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 2.2e-16 90.1 57 61.4
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 2.8e-16 89.7 181 30.4
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 3.7e-16 89.4 57 56.1
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 3.7e-16 89.4 57 56.1
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 3.7e-16 89.4 57 56.1
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 3.7e-16 89.4 219 34.2
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 4.8e-16 89.0 57 54.4
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 4.8e-16 89.0 57 54.4
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 4.8e-16 89.0 58 53.4
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 4.8e-16 89.0 58 53.4
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 4.8e-16 89.0 190 39.5
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 6.3e-16 88.6 217 38.2
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 6.3e-16 88.6 58 53.4
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 6.3e-16 88.6 58 53.4
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 6.3e-16 88.6 208 35.6
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 8.2e-16 88.2 57 56.1
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 8.2e-16 88.2 58 55.2
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 2.4e-15 86.7 56 51.8
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 3.1e-15 86.3 179 48.0
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 3.1e-15 86.3 212 47.2
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 4.1e-15 85.9 178 39.9
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.1e-15 85.9 205 40.5
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 4.1e-15 85.9 208 39.9
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 5.3e-15 85.5 57 54.4
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 5.3e-15 85.5 57 54.4
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 5.3e-15 85.5 57 54.4
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 5.3e-15 85.5 57 54.4
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 5.3e-15 85.5 56 58.9
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 7.0e-15 85.1 49 65.3
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 7.0e-15 85.1 55 58.2
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 7.0e-15 85.1 56 55.4
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.2e-14 84.3 210 50.0
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 1.6e-14 84.0 55 56.4
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.6e-14 84.0 206 41.3
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.0e-14 83.6 51 56.9
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 2.0e-14 83.6 205 50.7
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 2.6e-14 83.2 211 53.6
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 3.5e-14 82.8 203 50.7
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 4.5e-14 82.4 211 32.2
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 4.5e-14 82.4 216 34.3
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 4.5e-14 82.4 216 34.3
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 4.5e-14 82.4 50 58.0
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 5.9e-14 82.0 215 45.1
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 7.7e-14 81.6 54 51.9
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.0e-13 81.3 56 53.6
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.0e-13 81.3 50 58.0
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.3e-13 80.9 56 53.6
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 1.3e-13 80.9 49 57.1
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 1.3e-13 80.9 206 41.3
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 1.7e-13 80.5 56 48.2
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.7e-13 80.5 220 30.0
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 1.7e-13 80.5 218 31.7
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.7e-13 80.5 53 58.5
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 1.7e-13 80.5 52 53.8
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 2.2e-13 80.1 54 50.0
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.2e-13 80.1 204 34.8
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 2.9e-13 79.7 57 52.6
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 2.9e-13 79.7 50 56.0
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 2.9e-13 79.7 215 38.1
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 2.9e-13 79.7 50 56.0
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 2.9e-13 79.7 50 60.0
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 3.8e-13 79.3 51 62.7
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 3.8e-13 79.3 224 29.5
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 3.8e-13 79.3 209 38.8
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 3.8e-13 79.3 50 58.0
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 5.0e-13 79.0 220 31.4
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 5.0e-13 79.0 214 39.7
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 5.0e-13 79.0 51 56.9
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 6.5e-13 78.6 222 50.0
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.5e-13 78.2 49 59.2
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 8.5e-13 78.2 206 30.6
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 1.1e-12 77.8 48 58.3
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 1.5e-12 77.4 51 56.9
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.5e-12 77.4 224 42.9
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.5e-12 77.4 48 54.2
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.5e-12 77.4 208 32.7
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.5e-12 77.4 215 41.4
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.9e-12 77.0 219 53.4
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.9e-12 77.0 219 53.4
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.9e-12 77.0 50 54.0
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.5e-12 76.6 208 37.5
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 2.5e-12 76.6 56 55.4
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 3.2e-12 76.3 53 54.7
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 3.2e-12 76.3 226 45.6
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 4.2e-12 75.9 50 54.0
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 4.2e-12 75.9 48 54.2
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 5.5e-12 75.5 51 52.9
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 5.5e-12 75.5 57 49.1
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 5.5e-12 75.5 48 58.3
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 7.2e-12 75.1 51 54.9
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 7.2e-12 75.1 51 52.9
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 9.4e-12 74.7 56 51.8
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 9.4e-12 74.7 193 39.4
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.2e-11 74.3 53 50.9
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.2e-11 74.3 58 50.0
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 1.2e-11 74.3 47 59.6
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 1.6e-11 73.9 55 50.9
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.1e-11 73.6 53 52.8
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 2.1e-11 73.6 217 47.5
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.1e-11 73.6 212 35.8
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 3.6e-11 72.8 50 50.0
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 3.6e-11 72.8 55 49.1
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.7e-11 72.4 55 47.3
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.7e-11 72.4 55 47.3
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 4.7e-11 72.4 47 57.4
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 8.0e-11 71.6 52 50.0
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 8.0e-11 71.6 52 50.0
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.0e-10 71.2 55 45.5
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 1.4e-10 70.9 59 44.1
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.4e-10 70.9 55 45.5
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 1.4e-10 70.9 47 55.3
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.8e-10 70.5 54 51.9
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.3e-10 70.1 209 40.7
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 2.3e-10 70.1 59 44.1
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 3.0e-10 69.7 52 46.2
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 4.0e-10 69.3 53 43.4
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 6.8e-10 68.6 56 46.4
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 8.8e-10 68.2 47 53.2
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.2e-09 67.8 49 51.0
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.5e-09 67.4 50 50.0
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.5e-09 67.4 47 51.1
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 2.0e-09 67.0 50 48.0
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.0e-09 67.0 211 37.4
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.0e-09 67.0 49 53.1
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.0e-09 67.0 49 53.1
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.6e-09 66.6 49 51.0
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 4.4e-09 65.9 203 39.9
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 4.4e-09 65.9 202 38.1
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 4.4e-09 65.9 49 51.0
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 7.5e-09 65.1 202 37.6
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 9.8e-09 64.7 51 43.1
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-08 64.3 207 30.9
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 1.3e-08 64.3 51 45.1
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 2.8e-08 63.2 180 43.3
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.7e-08 62.8 48 50.0
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.1e-07 59.3 48 47.9
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 2.0e-06 57.0 44 43.2
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 4.5e-06 55.8 45 44.4


User provided reference genes

Program Settings