Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 9.6e-112 406.8 194 100.0
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 3.1e-86 322.0 194 80.4
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 2.1e-82 309.3 187 80.7
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 4.7e-82 308.1 184 76.6
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 6.1e-82 307.8 183 78.1
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 3.0e-81 305.4 194 74.2
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 6.7e-81 304.3 194 74.7
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 8.8e-81 303.9 182 78.6
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 1.5e-80 303.1 185 74.6
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 5.7e-80 301.2 206 70.9
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 5.7e-80 301.2 189 77.8
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 1.3e-79 300.1 185 76.2
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 3.7e-79 298.5 185 76.2
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 6.3e-79 297.7 187 77.0
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 8.2e-79 297.4 184 76.1
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 8.2e-79 297.4 189 76.7
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 1.1e-78 297.0 183 74.9
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 1.1e-78 297.0 184 77.2
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 3.1e-78 295.4 189 75.1
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 3.1e-78 295.4 183 75.4
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 4.1e-78 295.0 184 74.5
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 4.1e-78 295.0 182 76.9
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.2e-77 293.5 185 76.2
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 3.5e-77 292.0 185 77.3
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 5.9e-77 291.2 187 74.9
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 5.9e-77 291.2 183 75.4
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 5.9e-77 291.2 184 73.4
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 1.0e-76 290.4 188 73.9
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 1.3e-76 290.0 194 71.6
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 2.2e-76 289.3 189 73.5
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 2.2e-76 289.3 174 75.3
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 5.0e-76 288.1 185 73.5
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 5.0e-76 288.1 178 75.8
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 5.0e-76 288.1 185 71.4
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 5.0e-76 288.1 182 72.0
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 1.1e-75 287.0 184 72.3
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 1.1e-75 287.0 184 72.3
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.5e-75 286.6 187 70.6
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.9e-75 286.2 196 69.4
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 2.5e-75 285.8 188 75.5
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 3.2e-75 285.4 180 72.2
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 4.2e-75 285.0 185 70.8
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 4.2e-75 285.0 190 71.6
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 5.5e-75 284.6 182 70.9
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 9.4e-75 283.9 188 69.1
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 1.2e-74 283.5 170 77.1
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 1.6e-74 283.1 176 77.8
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 1.6e-74 283.1 173 74.6
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 2.1e-74 282.7 190 72.1
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 2.1e-74 282.7 185 72.4
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 3.6e-74 282.0 163 81.0
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 6.1e-74 281.2 186 69.9
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 6.1e-74 281.2 184 71.2
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 1.0e-73 280.4 184 71.2
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.4e-73 280.0 185 70.3
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 5.2e-73 278.1 182 69.8
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 6.7e-73 277.7 185 69.2
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 1.5e-72 276.6 184 69.0
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 2.0e-72 276.2 182 72.5
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 3.3e-72 275.4 185 70.3
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 9.7e-72 273.9 163 76.7
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 1.3e-71 273.5 182 72.5
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 1.7e-71 273.1 182 72.5
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 2.2e-71 272.7 195 67.2
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 2.8e-71 272.3 182 70.9
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 3.7e-71 271.9 182 72.0
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 3.7e-71 271.9 182 72.0
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 3.7e-71 271.9 159 82.4
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 3.7e-71 271.9 164 76.2
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 3.7e-71 271.9 162 74.7
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 6.3e-71 271.2 185 69.2
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 6.3e-71 271.2 182 70.9
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 8.2e-71 270.8 190 68.4
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 1.1e-70 270.4 189 67.2
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 1.1e-70 270.4 182 70.9
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 1.4e-70 270.0 182 70.9
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 1.8e-70 269.6 182 70.9
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 2.4e-70 269.2 182 70.9
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 3.1e-70 268.9 186 69.4
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 4.1e-70 268.5 188 69.1
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 5.3e-70 268.1 182 70.3
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 5.3e-70 268.1 188 68.6
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 1.2e-69 266.9 184 70.1
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 2.0e-69 266.2 182 70.9
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 2.0e-69 266.2 185 66.5
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 2.0e-69 266.2 182 71.4
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 3.5e-69 265.4 182 70.9
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 1.3e-68 263.5 184 69.0
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 2.9e-68 262.3 164 76.2
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 1.9e-67 259.6 196 63.3
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 3.6e-66 255.4 166 72.9
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 2.3e-65 252.7 181 68.0
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 2.3e-65 252.7 176 69.3
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 5.2e-65 251.5 150 81.3
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 8.8e-65 250.8 187 64.2
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 7.5e-64 247.7 187 64.7
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 1.7e-63 246.5 184 65.2
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 2.2e-63 246.1 152 78.3
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 3.7e-63 245.4 182 67.0
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 2.4e-62 242.7 141 78.0
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 3.1e-62 242.3 277 50.2
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 2.0e-61 239.6 238 52.5
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 2.7e-61 239.2 186 59.7
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 4.5e-61 238.4 182 61.5
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 5.9e-61 238.0 148 75.7
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 8.5e-60 234.2 147 76.2
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.9e-59 233.0 194 57.2
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 3.2e-59 232.3 240 55.4
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 3.4e-56 222.2 157 68.2
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.5e-51 206.8 152 67.1
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 9.5e-51 204.1 128 75.8
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 9.8e-48 194.1 157 59.2
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 2.2e-47 193.0 171 57.3
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 1.2e-45 187.2 180 51.1
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 2.0e-45 186.4 150 58.7
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 3.5e-45 185.7 126 69.8
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 8.6e-44 181.0 107 77.6
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 1.9e-43 179.9 126 69.0
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 4.3e-43 178.7 104 78.8
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 5.6e-43 178.3 110 80.0
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 1.2e-42 177.2 128 67.2
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 6.8e-41 171.4 128 62.5
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 2.6e-40 169.5 132 62.9
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 1.9e-38 163.3 97 77.3
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 7.8e-37 157.9 130 55.4
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 1.9e-35 153.3 132 59.8
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.2e-34 150.6 226 40.3
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 2.1e-34 149.8 140 50.7
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 2.8e-34 149.4 91 74.7
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 2.7e-29 132.9 86 70.9
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 4.3e-27 125.6 92 62.0
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 4.9e-23 112.1 83 67.5
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 1.2e-21 107.5 185 38.9
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 1.7e-20 103.6 184 37.5
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 5.1e-20 102.1 122 52.5
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 2.3e-12 76.6 83 51.8


User provided reference genes

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