Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 9.9e-278 959.5 500 100.0
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 1.2e-190 670.2 500 69.8
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 2.3e-189 666.0 499 70.1
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 4.3e-188 661.8 500 70.2
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 4.7e-187 658.3 501 69.1
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 6.8e-186 654.4 525 66.7
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 1.2e-185 653.7 480 70.0
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 4.4e-185 651.7 498 70.1
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 1.0e-181 640.6 500 68.8
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 1.7e-181 639.8 502 67.7
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 1.1e-180 637.1 499 68.7
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 1.9e-180 636.3 499 67.1
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 5.6e-180 634.8 467 71.5
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 2.8e-179 632.5 495 67.1
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 3.6e-179 632.1 499 68.1
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 4.0e-178 628.6 441 74.6
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 8.9e-178 627.5 501 67.7
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 1.5e-177 626.7 450 73.3
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 2.9e-176 622.5 464 70.9
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 2.9e-176 622.5 502 67.1
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 3.8e-176 622.1 512 64.6
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 5.4e-175 618.2 491 66.4
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 2.1e-174 616.3 464 70.3
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 1.7e-173 613.2 493 67.3
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 6.6e-173 611.3 476 68.5
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 6.6e-173 611.3 494 67.0
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.1e-172 610.5 509 64.2
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 4.3e-172 608.6 493 65.5
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 2.1e-171 606.3 498 64.9
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 1.8e-170 603.2 501 65.1
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 1.2e-169 600.5 471 67.1
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 5.8e-169 598.2 451 70.3
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 1.3e-168 597.0 483 67.3
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 1.3e-168 597.0 493 65.5
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 2.2e-168 596.3 549 59.7
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 4.9e-168 595.1 483 67.1
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 8.4e-168 594.3 438 71.5
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 1.1e-167 594.0 459 68.8
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 5.4e-167 591.7 446 68.2
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 9.3e-167 590.9 472 66.1
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 1.6e-166 590.1 441 70.5
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 2.1e-166 589.7 503 64.0
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 2.1e-166 589.7 484 65.7
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 3.9e-165 585.5 502 64.1
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 5.1e-165 585.1 503 64.4
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 8.7e-165 584.3 497 63.4
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 2.1e-163 579.7 503 61.8
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 4.8e-163 578.6 460 66.7
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 1.8e-162 576.6 443 67.7
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 2.4e-162 576.2 499 64.3
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 5.3e-162 575.1 495 64.0
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 6.9e-162 574.7 443 67.7
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 1.5e-161 573.5 473 64.1
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 3.4e-161 572.4 459 68.0
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 7.6e-161 571.2 499 63.3
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 1.4e-159 567.0 481 63.2
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 9.3e-159 564.3 485 63.1
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 2.1e-158 563.1 444 68.0
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 3.9e-157 558.9 495 63.4
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 1.1e-156 557.4 483 63.8
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 2.4e-154 549.7 442 67.4
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 2.4e-154 549.7 463 65.2
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 4.0e-154 548.9 463 65.2
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 2.0e-153 546.6 464 65.1
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 4.5e-153 545.4 462 64.9
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 2.2e-152 543.1 461 64.0
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 1.9e-151 540.0 461 63.8
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 1.9e-151 540.0 518 61.2
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 5.5e-151 538.5 452 64.8
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 1.2e-150 537.3 448 63.2
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 3.5e-150 535.8 483 61.7
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 6.0e-150 535.0 441 65.1
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 5.1e-149 531.9 437 64.5
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.5e-148 529.6 499 61.1
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 6.9e-146 521.5 444 63.3
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 3.4e-145 519.2 442 64.7
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 2.2e-144 516.5 456 60.3
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 4.2e-143 512.3 407 64.9
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 1.9e-140 503.4 438 61.9
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.5e-140 503.1 424 65.8
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 4.1e-138 495.7 477 56.4
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 4.6e-134 482.3 345 73.3
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 6.1e-134 481.9 348 72.1
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 7.4e-132 474.9 495 56.4
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 3.7e-131 472.6 388 66.8
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 3.5e-121 439.5 294 72.8
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 5.2e-117 425.6 322 69.3
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 1.8e-114 417.2 291 73.5
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 4.5e-113 412.5 339 64.0
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 1.5e-108 397.5 334 59.3
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 1.4e-106 391.0 524 42.9
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 1.8e-106 390.6 512 44.9
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 2.4e-106 390.2 332 62.0
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 1.0e-101 374.8 334 59.0
FAN19G1365 Fragaria x ananassa HOM05D002567 ORTHO05D007435 5.7e-92 342.4 259 68.3
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 5.4e-90 335.9 280 63.6
Atru.chr5.1231 Acer truncatum HOM05D002567 ORTHO05D007435 9.5e-87 325.1 266 64.7
Solyc09g074740.2 Solanum lycopersicum HOM05D002567 ORTHO05D007435 9.5e-87 325.1 220 74.1
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 2.3e-85 320.5 318 57.5
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.2e-83 313.9 244 68.4
Peaxi162Scf00067g01814 Petunia axillaris HOM05D002567 ORTHO05D007435 1.9e-82 310.8 249 67.9
Atru.chr5.1230 Acer truncatum HOM05D002567 ORTHO05D007435 1.2e-70 271.6 212 70.8
Solyc09g074750.3 Solanum lycopersicum HOM05D002567 ORTHO05D007435 1.3e-67 261.5 233 61.4
Peaxi162Scf00067g01819 Petunia axillaris HOM05D002567 ORTHO05D007435 1.1e-66 258.5 230 61.3
arahy.Tifrunner.gnm1.ann1.XK0FMC Arachis hypogaea HOM05D002567 ORTHO05D007435 1.3e-38 165.2 272 43.8
PRCOL_00000973 Prasinoderma coloniale HOM05D002567 ORTHO05D007435 8.2e-30 136.0 308 30.8
arahy.Tifrunner.gnm1.ann1.5I5ID6 Arachis hypogaea HOM05D002567 ORTHO05D007435 1.1e-29 135.6 146 56.2
CAN.G1349.13 Capsicum annuum HOM05D000586 ORTHO05D007435 3.1e-29 134.0 98 66.3
arahy.Tifrunner.gnm1.ann1.L0WASJ Arachis hypogaea HOM05D002567 ORTHO05D007435 4.1e-29 133.7 146 55.5
DCAR_017872 Daucus carota HOM05D002567 ORTHO05D007435 3.8e-27 127.1 76 78.9
Cfa024758 Carpinus fangiana HOM05D002567 ORTHO05D007435 1.4e-26 125.2 320 30.0
MCO08G095 Micromonas commoda HOM05D002567 ORTHO05D007435 1.9e-26 124.8 338 28.7
Duzib133G1109 Durio zibethinus HOM05D002567 ORTHO05D007435 9.3e-26 122.5 92 67.4
Duzib133G0811 Durio zibethinus HOM05D002567 ORTHO05D007435 2.3e-24 117.9 92 66.3
Nitab4.5_0011064g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 3.0e-24 117.5 108 60.2
CAN.G312.11 Capsicum annuum HOM05D000586 ORTHO05D003356 1.8e-21 108.2 78 70.5
Ciclev10006598m.g Citrus clementina HOM05D002567 ORTHO05D007435 3.1e-21 107.5 64 87.5
CARHR055860 Cardamine hirsuta HOM05D002567 ORTHO05D007435 2.5e-18 97.8 92 55.4
Actinidia21062 Actinidia chinensis HOM05D002567 ORTHO05D007435 3.6e-17 94.0 72 75.0
CARHR220570 Cardamine hirsuta HOM05D002567 ORTHO05D007435 7.9e-17 92.8 95 56.8
CAN.G2.56 Capsicum annuum HOM05D000586 ORTHO05D003356 1.7e-14 85.1 97 51.5
Nitab4.5_0005578g0030 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.7e-14 85.1 84 54.8
Oeu011429.1 Olea europaea HOM05D002567 ORTHO05D007435 4.5e-12 77.0 48 77.1
arahy.Tifrunner.gnm1.ann1.66ANXA Arachis hypogaea HOM05D002567 ORTHO05D007435 7.7e-12 76.3 77 50.6
EL10Ac7g17491 Beta vulgaris HOM05D002567 ORTHO05D007435 1.0e-08 65.9 40 77.5
arahy.Tifrunner.gnm1.ann1.1E45SP Arachis hypogaea HOM05D000870 ORTHO05D000715 2.3e-08 64.7 147 31.3
arahy.Tifrunner.gnm1.ann1.3T6XNU Arachis hypogaea HOM05D000870 ORTHO05D000715 2.3e-08 64.7 147 31.3
SEGI_29117 Sequoiadendron giganteum HOM05D002567 ORTHO05D007435 3.9e-08 63.9 79 38.0
RcHm_v2.0_Chr5g0024041 Rosa chinensis HOM05D000870 ORTHO05D000715 1.1e-07 62.4 301 23.6
Cpa.g.sc32.72 Carica papaya HOM05D000870 ORTHO05D000715 1.5e-07 62.0 145 27.6
Sopen09g029580 Solanum pennellii HOM05D002567 ORTHO05D007435 1.5e-07 62.0 47 66.0
Ca_16274_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 2.6e-07 61.2 147 31.3
Glyma.09G122600 Glycine max HOM05D000870 ORTHO05D000715 2.6e-07 61.2 147 31.3
Psat5g111840 Pisum sativum HOM05D000870 ORTHO05D000715 3.3e-07 60.8 145 30.3
FvH4_3g14571 Fragaria vesca HOM05D000870 ORTHO05D000715 5.7e-07 60.1 145 26.9
FAN11G3865 Fragaria x ananassa HOM05D000870 ORTHO05D000715 5.7e-07 60.1 145 26.9
AUR62042552 Chenopodium quinoa HOM05D004615 ORTHO05D000004 9.7e-07 59.3 41 61.0
Lsat_1_v5_gn_5_86321 Lactuca sativa HOM05D000295 ORTHO05D001778 9.7e-07 59.3 36 80.6
SalBow8G1376 Salvia bowleyana HOM05D000870 ORTHO05D000715 9.7e-07 59.3 301 22.3
SalBow8G4043 Salvia bowleyana HOM05D000870 ORTHO05D000715 9.7e-07 59.3 301 22.3
SalBow8G5136 Salvia bowleyana HOM05D000870 ORTHO05D000715 9.7e-07 59.3 301 22.3
CANSAT56G0490 Cannabis sativa HOM05D000870 ORTHO05D000715 1.3e-06 58.9 145 28.3
ECA236G4328 Erigeron canadensis HOM05D000870 ORTHO05D000715 1.3e-06 58.9 300 21.7
FAN11G1640 Fragaria x ananassa HOM05D000870 ORTHO05D000715 1.3e-06 58.9 145 26.9
FAN16G2198 Fragaria x ananassa HOM05D000870 ORTHO05D000715 1.3e-06 58.9 145 26.9
FAN21G3603 Fragaria x ananassa HOM05D000870 ORTHO05D000715 1.3e-06 58.9 145 26.9
FAN25G0434 Fragaria x ananassa HOM05D000870 ORTHO05D000715 1.3e-06 58.9 145 26.9
MD05G1235000 Malus domestica HOM05D000870 ORTHO05D000715 1.3e-06 58.9 145 26.9
COL.COLO4_04573 Corchorus olitorius HOM05D000870 ORTHO05D000715 1.7e-06 58.5 300 23.3
FAN16G3420 Fragaria x ananassa HOM05D000870 ORTHO05D000715 1.7e-06 58.5 145 26.2
PSO675G5941 Papaver somniferum HOM05D000870 ORTHO05D000715 2.2e-06 58.2 300 22.7
Rhsim06G0243200 Rhododendron simsii HOM05D000870 ORTHO05D000715 2.2e-06 58.2 304 23.0
MSTRG.13086 Avicennia marina HOM05D000870 ORTHO05D000715 3.7e-06 57.4 301 23.6
DCAR_009656 Daucus carota HOM05D000870 ORTHO05D000715 3.7e-06 57.4 300 23.0
Lalb_Chr03g0030331 Lupinus albus HOM05D000870 ORTHO05D000715 3.7e-06 57.4 147 28.6
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 4.8e-06 57.0 41 73.2
Duzib268G0323 Durio zibethinus HOM05D000870 ORTHO05D000715 4.8e-06 57.0 300 23.0
GSVIVG01036746001 Vitis vinifera HOM05D000870 ORTHO05D000715 4.8e-06 57.0 297 23.6
SGA_v2.0_scaffold186G40190 Striga asiatica HOM05D000870 ORTHO05D000715 8.2e-06 56.2 300 23.3
HPP92_021858 Vanilla planifolia HOM05D000870 ORTHO05D000715 8.2e-06 56.2 145 28.3


User provided reference genes

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