Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.05G064201 Manihot esculenta HOM05D003821 ORTHO05D004449 4.0e-44 181.0 90 100.0
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 7.1e-17 90.5 60 76.7
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.6e-16 89.4 60 78.3
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 4.6e-16 87.8 60 75.0
Gohir.D11G223400 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.5e-14 82.8 61 68.9
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 1.5e-14 82.8 74 63.5
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 4.3e-14 81.3 52 80.8
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 4.3e-14 81.3 59 71.2
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 1.6e-13 79.3 53 75.5
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 1.6e-13 79.3 53 75.5
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 2.1e-13 79.0 53 75.5
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 6.2e-13 77.4 52 76.9
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 8.1e-13 77.0 53 77.4
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 8.1e-13 77.0 78 55.1
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 1.4e-12 76.3 65 61.5
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 1.8e-12 75.9 60 68.3
Gorai.007G237400 Gossypium raimondii HOM05D003821 ORTHO05D004449 1.8e-12 75.9 75 57.3
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 1.8e-12 75.9 88 52.3
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 2.4e-12 75.5 61 70.5
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 2.4e-12 75.5 52 75.0
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 3.1e-12 75.1 78 57.7
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 6.9e-12 73.9 52 73.1
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 1.5e-11 72.8 61 65.6
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 1.5e-11 72.8 45 80.0
COL.COLO4_23375 Corchorus olitorius HOM05D003821 ORTHO05D004449 2.0e-11 72.4 42 85.7
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 3.4e-11 71.6 52 71.2
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 5.8e-11 70.9 61 63.9
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 7.6e-11 70.5 101 45.5
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 7.6e-11 70.5 77 53.2
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 7.6e-11 70.5 77 53.2
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 1.3e-10 69.7 62 62.9
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 6.4e-10 67.4 71 54.9
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 6.4e-10 67.4 60 60.0
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 8.4e-10 67.0 69 56.5
Gohir.A10G164000 Gossypium hirsutum HOM05D003821 ORTHO05D004449 8.4e-10 67.0 52 65.4
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 8.4e-10 67.0 66 59.1
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 8.4e-10 67.0 52 65.4
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 4.2e-09 64.7 57 63.2
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.2e-09 64.7 61 59.0
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 7.1e-09 63.9 45 77.8
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 7.1e-09 63.9 57 63.2
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 7.1e-09 63.9 42 76.2
Glyma.03G213100 Glycine max HOM05D003821 ORTHO05D004449 7.1e-09 63.9 49 63.3
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 7.1e-09 63.9 78 48.7
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 9.3e-09 63.5 53 62.3
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 1.2e-08 63.2 57 63.2
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 2.1e-08 62.4 57 57.9
MELO3C032813.2 Cucumis melo HOM05D003821 ORTHO05D004449 2.7e-08 62.0 44 70.5
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 3.5e-08 61.6 69 52.2
MBI02_g32313_MAGBIO Magnolia biondii HOM05D036700 ORTHO05D048553 4.6e-08 61.2 50 66.0
Medtr7g108610 Medicago truncatula HOM05D003821 ORTHO05D004449 6.0e-08 60.8 50 68.0
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 7.8e-08 60.5 35 82.9
Gohir.A08G117600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 1.0e-07 60.1 61 55.7
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 1.3e-07 59.7 45 62.2
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.3e-07 58.9 78 50.0
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 2.3e-07 58.9 38 73.7
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 3.0e-07 58.5 62 53.2
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 3.0e-07 58.5 45 71.1
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 3.0e-07 58.5 81 44.4
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 3.9e-07 58.2 45 64.4
VMungo0251G2956 Vigna mungo HOM05D000069 ORTHO05D022756 3.9e-07 58.2 46 63.0
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 5.1e-07 57.8 40 70.0
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 6.6e-07 57.4 57 52.6
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.6e-07 57.4 37 73.0
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 1.1e-06 56.6 37 70.3
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 1.9e-06 55.8 67 50.7
Aa31LG10G6300 Aethionema arabicum HOM05D003821 ORTHO05D004449 2.5e-06 55.5 39 66.7
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 2.5e-06 55.5 62 51.6
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 2.5e-06 55.5 34 76.5
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 2.5e-06 55.5 34 79.4
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 3.3e-06 55.1 38 68.4
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 3.3e-06 55.1 48 56.2
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 3.3e-06 55.1 52 57.7
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 3.3e-06 55.1 87 44.8
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 4.3e-06 54.7 53 50.9
Hund20554 Selenicereus undatus HOM05D003821 ORTHO05D004449 5.6e-06 54.3 34 70.6
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 7.3e-06 53.9 61 50.8
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 9.6e-06 53.5 37 70.3
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 9.6e-06 53.5 34 76.5


User provided reference genes

Program Settings